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NC_062753.1__YP_010357533.1__M1M31_gp91__00091

Bact-Vir

NC_062753.1__YP_010357533.1__M1M31_gp91__00091

Identity

Accession:
NC_062753 ↗
Kingdom:
phage

Quality

72.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-66
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.73 49.0 5.49e-01 76.9% 95.8%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.69 50.0 4.17e-01 89.2% 43.2%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.68 44.0 3.74e-01 90.8% 39.8%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.67 57.0 5.34e-01 98.5% 78.5%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 42.0 4.21e-01 80.0% 63.1%
3f2kB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 41.0 2.98e-01 81.5% 22.4%
4mdaA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 45.0 3.24e-01 81.5% 25.0%
1i1nA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 46.0 3.21e-01 83.1% 80.4%
1iyxA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 43.0 3.57e-01 78.5% 85.6%
6gitA02 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.60 44.0 2.84e-01 81.5% 57.2%
4ns4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 49.0 3.28e-01 93.8% 64.6%
1nycA00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.58 44.0 3.78e-01 84.6% 93.7%
3loyA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 42.0 3.64e-01 76.9% 62.4%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 44.0 3.87e-01 83.1% 91.8%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.57 46.0 3.66e-01 92.3% 76.7%
1zuoB00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 49.0 3.89e-01 100.0% 65.0%
1stzA03 3.30.390.60 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Heat-inducible transcription repressor hrca homolog; domain 3 0.57 43.0 3.96e-01 84.6% 91.0%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.57 39.0 3.41e-01 72.3% 78.4%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 3.93e-01 95.4% 83.2%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.57 44.0 4.17e-01 87.7% 89.9%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.56 45.0 3.64e-01 92.3% 59.1%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.55 39.0 3.89e-01 83.1% 71.8%
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.55 44.0 2.74e-01 90.8% 30.6%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 42.0 4.25e-01 100.0% 89.6%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 44.0 4.37e-01 98.5% 92.9%
5z1gB01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.54 43.0 3.14e-01 92.3% 73.5%
2zw5A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 33.0 2.81e-01 73.8% 33.6%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.53 39.0 3.76e-01 89.2% 69.7%
5khaB01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.53 41.0 2.87e-01 90.8% 75.0%
5kvsA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 38.0 2.96e-01 80.0% 94.4%
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.52 42.0 3.80e-01 93.8% 91.8%
2v4dE01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.52 37.0 3.52e-01 78.5% 77.4%
2g47A03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 39.0 2.69e-01 93.8% 22.9%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 41.0 2.71e-01 87.7% 26.8%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.19e-01 95.4% 72.9%
4yfbC01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 37.0 2.50e-01 78.5% 37.6%
3rmuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 33.0 2.75e-01 70.8% 32.1%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 3.45e-01 98.5% 83.2%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 41.0 2.84e-01 100.0% 75.8%
1k8kD02 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 40.0 3.36e-01 95.4% 84.0%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3425722 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.69 47.0 4.38e-01 100.0% 55.3%
3432156 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.68 47.0 5.06e-01 100.0% 85.5%
3461521 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.68 53.0 4.46e-01 90.8% 48.7%
5020279 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.68 50.0 3.89e-01 78.5% 58.6%
3861438 220.1.1.174 beta barrels › PH domain-like › PH domain-like › PH domain-like › Cybc1_Eros 0.68 50.0 4.06e-01 78.5% 44.2%
3280174 223.5.1.0 a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like 0.66 41.0 3.76e-01 75.4% 48.2%
3444177 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 55.0 5.20e-01 98.5% 86.3%
4054729 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.65 52.0 4.99e-01 93.8% 77.3%
4016640 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 51.0 3.21e-01 86.2% 22.0%
3645698 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 47.0 3.46e-01 78.5% 36.1%
3811727 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.64 56.0 3.76e-01 100.0% 93.1%
3599909 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 54.0 4.58e-01 98.5% 72.7%
3440368 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 51.0 3.17e-01 89.2% 25.6%
3615642 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.63 48.0 4.86e-01 93.8% 86.2%
3443030 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 53.0 5.03e-01 100.0% 91.3%
None 0.62 43.0 3.00e-01 72.3% 65.6%
3264986 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.61 49.0 4.14e-01 87.7% 74.5%
3645540 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.61 45.0 2.98e-01 76.9% 37.5%
3515798 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.61 38.0 2.59e-01 70.8% 15.7%
4167707 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.60 50.0 3.33e-01 96.9% 65.0%
3434332 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.60 51.0 3.26e-01 95.4% 69.8%
4376478 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 50.0 4.59e-01 96.9% 74.4%
3278065 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.60 44.0 3.75e-01 89.2% 47.3%
3828127 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.60 44.0 3.52e-01 80.0% 50.4%
3963338 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.60 44.0 2.75e-01 78.5% 36.4%
4115704 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.60 45.0 4.36e-01 93.8% 73.3%
3691661 220.1.1.83 beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_N 0.59 52.0 3.81e-01 100.0% 77.8%
3541856 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.59 43.0 3.43e-01 87.7% 35.9%
4929818 861.1.1.0 a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein 0.59 45.0 3.66e-01 86.2% 97.0%
3801966 252.1.1.2 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › DUF7028 0.59 39.0 3.77e-01 100.0% 60.0%
2987310 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 49.0 4.28e-01 100.0% 60.2%
4302400 5.1.7.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.58 48.0 2.84e-01 92.3% 22.2%
3945427 2.1.1.26 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.58 41.0 3.78e-01 78.5% 56.5%
4974435 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 46.0 4.11e-01 87.7% 63.2%
3893915 330.1.1.3 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer 0.58 47.0 4.03e-01 100.0% 59.2%
3742045 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.58 46.0 3.71e-01 87.7% 66.2%
3475000 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 48.0 3.43e-01 100.0% 55.2%
3781448 220.1.1.83 beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_N 0.58 51.0 3.68e-01 100.0% 77.8%
3933100 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 46.0 4.60e-01 100.0% 88.6%
3846927 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 46.0 4.19e-01 98.5% 65.3%
3497129 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 47.0 4.20e-01 100.0% 72.4%
3961733 330.10.1.0 a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.57 48.0 4.40e-01 100.0% 74.4%
3244230 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.57 44.0 3.41e-01 84.6% 69.3%
3815611 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 47.0 3.14e-01 98.5% 84.0%
4299844 223.1.1.135 a+b three layers › Profilin-like › sensor domains › sensor domains › Sensor_TM1, Stimulus_sens_1 0.56 40.0 2.97e-01 75.4% 73.5%
3170740 220.1.1.83 beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_N 0.56 48.0 3.51e-01 100.0% 72.6%
3209694 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 44.0 4.00e-01 100.0% 63.0%
3806681 5.1.5.96 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 0.55 46.0 3.12e-01 98.5% 85.3%
3439646 284.1.3.2 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.55 40.0 3.56e-01 81.5% 61.9%
3337688 241.6.1.0 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.55 45.0 3.66e-01 95.4% 89.6%
3408937 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.55 44.0 4.18e-01 100.0% 76.2%
3685300 378.1.1.9 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.55 43.0 3.12e-01 90.8% 60.9%
4352332 3283.1.1.1 a+b two layers › Nitrogen fixation protein › Nitrogen fixation protein › Nitrogen fixation protein › DUF269 0.55 45.0 3.71e-01 100.0% 90.0%
3278616 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.63e-01 93.8% 75.2%
3267754 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.54 40.0 3.32e-01 81.5% 93.6%
3707978 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.54 40.0 2.93e-01 81.5% 61.5%
3782338 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 43.0 4.00e-01 100.0% 67.7%
3714496 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.54 37.0 2.77e-01 78.5% 26.1%
4029544 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.53e-01 95.4% 71.4%
1178584 227.1.1.13 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc 0.54 39.0 3.10e-01 80.0% 84.9%
5002092 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.53 39.0 3.56e-01 84.6% 57.8%
3350913 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.53 41.0 3.17e-01 89.2% 81.8%
4507316 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.52 41.0 3.54e-01 92.3% 80.0%
3792948 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 3.80e-01 100.0% 94.5%
3510281 246.3.1.4 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.51 37.0 2.76e-01 100.0% 25.9%
3953750 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 39.0 2.49e-01 86.2% 19.0%
3371393 4266.2.1.1 alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like › DUF309 0.51 38.0 2.93e-01 86.2% 70.8%
3949064 3454.1.1.0 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.51 38.0 3.90e-01 83.1% 93.8%
3964724 3675.1.1.1 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert 0.50 44.0 3.33e-01 96.9% 45.8%
3351701 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.50 43.0 3.34e-01 98.5% 77.3%
3217128 7525.1.1.2 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.50 41.0 2.71e-01 96.9% 32.1%
4968231 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.50 41.0 2.57e-01 96.9% 15.4%
3787121 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.50 41.0 3.47e-01 98.5% 86.4%