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YP_010357698.1

Arc-Vir

NC_062755__YP_010357698.1__M1M33-gp046__00101

Identity

Accession:
NC_062755 ↗
Protein ID:
YP_010357698.1 ↗
Kingdom:
archaea

Quality

80.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-110
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e8tA00 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.71 53.0 3.93e-01 79.3% 64.4%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.69 43.0 4.43e-01 72.4% 65.5%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.66 47.0 4.30e-01 78.2% 57.0%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.65 47.0 3.63e-01 75.9% 59.1%
3w15A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 53.0 3.51e-01 87.4% 24.6%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.64 57.0 3.61e-01 100.0% 36.8%
2obdA01 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.63 46.0 3.29e-01 78.2% 40.3%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.63 54.0 4.50e-01 95.4% 76.0%
3ostA00 3.30.310.220 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Fungal kinase associated-1 domain 0.63 41.0 3.69e-01 75.9% 48.7%
2rkcA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.62 56.0 3.61e-01 100.0% 49.9%
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.62 47.0 3.77e-01 79.3% 77.1%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.62 38.0 4.51e-01 72.4% 91.5%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.62 47.0 3.44e-01 81.6% 32.4%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 43.0 3.53e-01 72.4% 38.9%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.62 50.0 4.52e-01 89.7% 81.0%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.61 54.0 4.63e-01 100.0% 71.0%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 41.0 3.55e-01 72.4% 42.7%
2v4jB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.61 53.0 4.26e-01 100.0% 64.5%
2rckA01 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.61 44.0 3.36e-01 78.2% 55.0%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.60 53.0 4.28e-01 100.0% 60.9%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 43.0 3.62e-01 77.0% 68.2%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 43.0 3.33e-01 78.2% 35.1%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.59 52.0 4.43e-01 100.0% 70.7%
4u7aA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 52.0 3.47e-01 100.0% 34.3%
1b9vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 52.0 3.40e-01 100.0% 42.1%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 51.0 3.49e-01 100.0% 48.6%
2qrdA00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.57 41.0 3.84e-01 77.0% 61.4%
3zhaQ02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 45.0 3.93e-01 83.9% 70.2%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 46.0 3.71e-01 87.4% 89.6%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 44.0 3.66e-01 82.8% 83.3%
1x53A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 40.0 3.50e-01 77.0% 49.6%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 41.0 3.48e-01 78.2% 48.6%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.56 46.0 3.90e-01 94.3% 87.7%
2i99A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.55 43.0 3.57e-01 82.8% 50.0%
6em3x01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.55 41.0 3.24e-01 79.3% 38.4%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 39.0 3.36e-01 77.0% 59.2%
4hadB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 41.0 3.19e-01 81.6% 63.6%
1yf9A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 46.0 3.91e-01 100.0% 57.6%
2cg8C01 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.54 38.0 3.49e-01 74.7% 97.5%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 37.0 3.33e-01 73.6% 81.0%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.52 46.0 4.04e-01 100.0% 94.7%
3ni8A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 38.0 3.32e-01 78.2% 49.3%
6krwA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 45.0 3.18e-01 100.0% 62.3%
1f2uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 3.82e-01 98.9% 81.9%
5whzH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.41e-01 79.3% 56.1%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.50 40.0 3.70e-01 87.4% 73.0%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3938164 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.72 48.0 5.48e-01 80.5% 90.8%
3520574 5.1.2.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DPPIV_N 0.67 48.0 3.58e-01 75.9% 42.2%
3929694 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 53.0 3.25e-01 85.1% 20.8%
3615383 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.67 45.0 3.61e-01 70.1% 66.9%
4955671 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.65 52.0 5.45e-01 94.3% 95.0%
3189690 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.65 58.0 3.79e-01 100.0% 41.0%
3574500 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 53.0 3.33e-01 89.7% 22.3%
4426077 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.64 54.0 4.54e-01 94.3% 80.6%
4010371 295.1.1.45 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF30238 0.64 52.0 5.13e-01 90.8% 100.0%
3598806 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 54.0 3.52e-01 89.7% 24.3%
3628522 5.1.4.489 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Prenyltrans 0.63 53.0 3.05e-01 92.0% 13.0%
5024219 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 55.0 3.51e-01 100.0% 35.6%
3226662 7502.1.1.2 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.61 47.0 3.47e-01 81.6% 37.4%
2559760 216.1.1.5 a+b two layers › UBC-like › UBC-like › UBC-like › BRE 0.61 52.0 4.75e-01 100.0% 70.2%
3360262 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.61 54.0 4.19e-01 100.0% 54.7%
3326067 7502.1.1.2 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.61 46.0 3.40e-01 81.6% 36.6%
3959610 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.60 41.0 3.56e-01 74.7% 45.1%
5019287 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.60 36.0 3.73e-01 73.6% 62.4%
3656680 243.1.1.41 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Coa1 0.60 49.0 4.20e-01 87.4% 81.5%
3182356 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 47.0 4.10e-01 85.1% 89.6%
3955267 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.60 40.0 3.49e-01 74.7% 44.8%
3174953 69.1.1.2 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.60 43.0 3.15e-01 79.3% 28.8%
4025435 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.59 52.0 4.11e-01 100.0% 52.1%
3270312 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.59 52.0 4.20e-01 100.0% 59.4%
3238811 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.59 49.0 3.30e-01 93.1% 24.8%
3875250 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.59 40.0 3.28e-01 77.0% 37.6%
3707400 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 50.0 3.21e-01 100.0% 60.0%
4023264 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.58 45.0 3.64e-01 81.6% 53.1%
3460934 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.58 50.0 3.82e-01 95.4% 67.7%
3701349 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 49.0 3.16e-01 96.6% 38.0%
3203216 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.57 41.0 3.57e-01 79.3% 48.2%
3657011 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.56 52.0 3.41e-01 100.0% 53.2%
5069741 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 4.41e-01 88.5% 100.0%
3989865 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.55 40.0 2.85e-01 74.7% 37.9%
3850354 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.55 41.0 3.64e-01 79.3% 82.3%
3932499 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.55 47.0 3.14e-01 97.7% 30.9%
3866695 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.55 42.0 3.53e-01 95.4% 47.1%
3209928 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 47.0 2.98e-01 100.0% 43.1%
5057921 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 42.0 3.10e-01 85.1% 39.9%
3701022 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 3.87e-01 87.4% 80.8%
3648057 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 46.0 3.14e-01 100.0% 37.0%
3593811 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 42.0 3.77e-01 86.2% 91.2%
4968394 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.53 39.0 3.71e-01 79.3% 64.8%
4662296 331.12.1.1 a+b two layers › TBP-like › YugN-like › YugN-like › YugN 0.53 38.0 3.58e-01 86.2% 60.6%
3431362 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.53 39.0 3.13e-01 79.3% 47.6%
3253359 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 45.0 3.06e-01 96.6% 28.8%
4883064 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 39.0 2.79e-01 80.5% 27.2%
3502994 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 43.0 3.86e-01 98.9% 63.1%
3281179 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.53 45.0 3.95e-01 100.0% 63.0%
3606318 897.1.1.0 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.52 45.0 3.41e-01 97.7% 56.4%
4031111 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.52 38.0 2.79e-01 78.2% 38.7%
3193823 7502.1.1.2 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.51 38.0 2.77e-01 79.3% 88.1%
3712989 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.51 44.0 3.39e-01 97.7% 49.5%
5078784 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.51 37.0 2.75e-01 80.5% 34.4%
5013876 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 37.0 2.67e-01 77.0% 36.5%