←Back to structures

YP_010357758.1

Arc-Vir

NC_062756__YP_010357758.1__M1M34-gp021__00021

Identity

Accession:
NC_062756 ↗
Protein ID:
YP_010357758.1 ↗
Kingdom:
archaea

Quality

83.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Soleiviridae› Eilatmyovirus› Haloarcula_tailed_virus_2

TaxID: 2877989

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-50_106-199
PDB
Domain cluster: rep: JF974305__AGF91200.1__HAPG-00014__00014__D19-180
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fgxA00 3.30.2220.10 Alpha Beta › 2-Layer Sandwich › rbstp2171 › rbstp2171 0.80 49.0 5.59e-01 100.0% 81.2%
2ob9A00 3.30.2220.20 Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like 0.64 45.0 4.91e-01 100.0% 86.9%
4p1mB01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.64 20.0 3.35e-01 88.3% 77.8%
2jl8102 3.30.160.850 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 19.0 3.20e-01 89.8% 73.3%
3kluA01 3.30.2220.30 Alpha Beta › 2-Layer Sandwich › rbstp2171 › 0.57 43.0 4.62e-01 100.0% 91.8%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 27.0 3.32e-01 100.0% 71.1%
3c19A02 3.10.20.300 Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain 0.54 28.0 3.49e-01 98.4% 80.8%
2o18A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.54 37.0 2.88e-01 71.1% 88.9%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 22.0 3.14e-01 92.2% 97.7%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.53 27.0 3.31e-01 72.7% 77.2%
2vixA02 1.10.150.630 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.52 25.0 2.91e-01 89.1% 60.7%
2bwfA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 27.0 3.36e-01 99.2% 81.8%
4ig1A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.52 37.0 2.79e-01 71.9% 88.4%
3aimA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 36.0 2.86e-01 74.2% 92.6%
1euvB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 25.0 3.10e-01 100.0% 74.7%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
185252 3547.1.1.1 ↗ a+b two layers › uncharacterised protein rbstp2171 › uncharacterised protein rbstp2171 › uncharacterised protein rbstp2171 › DUF6848 0.80 49.0 5.59e-01 100.0% 81.2%
4954554 6050.1.1.0 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.72 49.0 5.38e-01 100.0% 84.8%
4957561 6050.1.1.0 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.71 51.0 5.59e-01 100.0% 89.5%
5005640 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.56 28.0 3.82e-01 97.7% 93.8%
3781912 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.56 27.0 3.57e-01 100.0% 84.3%
4944756 3604.1.1.0 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.54 26.0 3.67e-01 93.8% 98.3%
3310314 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.53 37.0 2.74e-01 71.9% 35.1%
4307618 230.4.1.1 ↗ a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE 0.51 36.0 3.17e-01 72.7% 80.0%
D2 high residues 202-269
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4n0hA00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.61 43.0 2.60e-01 73.5% 54.3%
3devA01 3.90.1640.10 Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › inorganic pyrophosphatase (n-terminal core) 0.58 47.0 3.46e-01 91.2% 82.3%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 38.0 3.43e-01 73.5% 79.6%
4r30A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 44.0 3.42e-01 100.0% 38.0%
4qndA00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 39.0 3.48e-01 77.9% 75.3%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.53 39.0 3.65e-01 80.9% 97.7%
2c8sA00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.53 42.0 3.39e-01 92.6% 65.1%
3qmlD00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 41.0 2.85e-01 91.2% 43.6%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3420695 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.53 45.0 3.11e-01 97.1% 51.4%
3166722 2004.1.1.14 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.52 42.0 2.67e-01 91.2% 71.4%