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YP_010357933.1

Arc-Vir

NC_062757__YP_010357933.1__M1M35-gp69__00069

Identity

Accession:
NC_062757 ↗
Protein ID:
YP_010357933.1 ↗
Kingdom:
archaea

Quality

79.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-87
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 48.0 5.75e-01 92.7% 100.0%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.72 51.0 5.74e-01 96.3% 100.0%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 48.0 4.50e-01 95.1% 56.4%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.71 50.0 4.75e-01 97.6% 61.2%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.70 53.0 4.78e-01 95.1% 59.6%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 39.0 4.87e-01 80.5% 95.7%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.69 52.0 5.66e-01 96.3% 98.5%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 47.0 4.23e-01 95.1% 52.2%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 5.01e-01 100.0% 82.2%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.67 54.0 5.07e-01 87.8% 88.0%
1kbaA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.66 39.0 4.25e-01 92.7% 71.2%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 56.0 4.47e-01 96.3% 50.3%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.65 53.0 3.88e-01 96.3% 33.8%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.64 40.0 4.70e-01 90.2% 100.0%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 51.0 4.84e-01 90.2% 99.0%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 43.0 3.61e-01 95.1% 44.1%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.59 48.0 4.46e-01 90.2% 97.2%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 46.0 3.81e-01 97.6% 46.7%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.59 47.0 3.82e-01 90.2% 73.5%
1mfnA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 39.0 3.81e-01 100.0% 62.4%
7zgmA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.58 47.0 3.38e-01 89.0% 82.0%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 40.0 3.78e-01 96.3% 58.1%
1mvpA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.57 44.0 3.97e-01 92.7% 59.8%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 45.0 3.70e-01 87.8% 95.0%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.57 47.0 3.87e-01 95.1% 100.0%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 41.0 3.48e-01 87.8% 46.4%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 45.0 3.71e-01 87.8% 92.2%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.56 32.0 3.99e-01 72.0% 100.0%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.56 47.0 4.06e-01 96.3% 99.3%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 46.0 4.18e-01 92.7% 88.4%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 47.0 3.78e-01 95.1% 48.7%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 43.0 3.57e-01 87.8% 71.3%
3s8zA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 42.0 2.80e-01 80.5% 23.7%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.55 43.0 4.27e-01 89.0% 100.0%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 44.0 3.32e-01 97.6% 35.8%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 46.0 3.71e-01 98.8% 47.0%
4kc5C03 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.54 42.0 2.88e-01 84.1% 65.8%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.54 48.0 4.19e-01 100.0% 74.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 39.0 4.22e-01 86.6% 92.6%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.54 46.0 4.10e-01 95.1% 85.7%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 46.0 3.97e-01 100.0% 99.3%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.53 43.0 3.78e-01 89.0% 84.4%
1jmoA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 36.0 3.01e-01 70.7% 90.7%
4u3qB00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.53 43.0 4.07e-01 90.2% 96.0%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.90e-01 98.8% 100.0%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.52 43.0 3.33e-01 93.9% 82.4%
2v5yA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.58e-01 98.8% 66.0%
2l8oA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 42.0 3.49e-01 89.0% 77.1%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 44.0 3.35e-01 97.6% 39.2%
3v0rA01 2.40.350.20 Mainly Beta › Beta Barrel › AOC barrel-like › 0.51 41.0 3.71e-01 92.7% 77.5%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.50 43.0 4.13e-01 97.6% 100.0%
4kg0A01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.50 42.0 3.48e-01 93.9% 79.7%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.50 42.0 2.92e-01 96.3% 39.9%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3414063 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.78 51.0 6.05e-01 90.2% 100.0%
3553983 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.76 54.0 6.08e-01 95.1% 100.0%
4000280 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 49.0 5.82e-01 96.3% 100.0%
3665882 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.75 52.0 4.37e-01 95.1% 43.7%
3712782 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 51.0 5.17e-01 95.1% 72.5%
4574546 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 54.0 6.01e-01 96.3% 98.5%
3275615 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.73 52.0 4.44e-01 91.5% 47.3%
3928136 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 51.0 5.84e-01 93.9% 100.0%
3923813 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 54.0 5.98e-01 93.9% 98.5%
5041801 4.15.1.0 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.72 62.0 6.13e-01 100.0% 88.2%
4210485 4.1.1.303 beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.71 52.0 5.69e-01 100.0% 96.9%
3615787 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.71 47.0 3.45e-01 93.9% 25.3%
4031177 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.70 48.0 3.57e-01 95.1% 27.6%
3730194 9.15.1.1 beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.70 63.0 4.69e-01 97.6% 72.2%
3841414 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 49.0 5.23e-01 93.9% 85.7%
2700914 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.69 42.0 4.32e-01 86.6% 62.5%
3244773 1.1.5.49 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.69 50.0 3.46e-01 95.1% 23.8%
3587906 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.69 56.0 5.68e-01 96.3% 90.0%
4988761 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.69 61.0 5.97e-01 98.8% 88.9%
5040907 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.69 48.0 3.52e-01 95.1% 26.5%
3696482 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 47.0 4.66e-01 93.9% 66.3%
4252954 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 50.0 5.35e-01 95.1% 91.4%
4971345 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 44.0 4.13e-01 80.5% 54.0%
3619619 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 48.0 5.11e-01 95.1% 85.7%
4625654 4.1.1.445 beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.67 51.0 5.34e-01 96.3% 90.7%
4083915 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 52.0 5.39e-01 97.6% 90.7%
3954254 4.1.1.387 beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c 0.66 48.0 5.17e-01 100.0% 98.5%
3545090 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.66 48.0 3.50e-01 95.1% 28.6%
3709279 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.35e-01 100.0% 82.2%
4561917 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.66 47.0 3.35e-01 96.3% 24.8%
3241890 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 49.0 4.61e-01 93.9% 66.0%
3989070 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.65 46.0 3.39e-01 95.1% 28.0%
3240407 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.65 51.0 5.44e-01 93.9% 97.1%
1503651 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 46.0 4.66e-01 95.1% 76.2%
3494683 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.90e-01 93.9% 88.6%
3627859 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.64 51.0 5.31e-01 95.1% 92.0%
4283343 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 54.0 5.51e-01 96.3% 96.2%
4987744 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.64 49.0 4.19e-01 100.0% 50.4%
3924375 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.63 50.0 5.22e-01 95.1% 92.0%
3632407 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 55.0 4.94e-01 97.6% 83.8%
4476045 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 48.0 5.13e-01 100.0% 95.7%
4302032 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 45.0 4.93e-01 96.3% 96.9%
3268160 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 55.0 5.36e-01 96.3% 88.9%
4596087 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 51.0 5.29e-01 93.9% 96.0%
3853539 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.63 44.0 2.82e-01 73.2% 88.3%
4367301 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 40.0 4.64e-01 89.0% 96.4%
4069560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 49.0 5.15e-01 96.3% 94.7%
3459099 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.62 56.0 5.14e-01 100.0% 78.1%
3925589 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 48.0 5.16e-01 93.9% 100.0%
4215369 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.61 55.0 4.73e-01 97.6% 69.6%
4484974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 52.0 5.16e-01 97.6% 90.6%
4251101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 52.0 5.17e-01 98.8% 91.8%
3816455 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.60 53.0 4.55e-01 95.1% 94.4%
3727760 219.1.1.129 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF7770 0.60 52.0 4.38e-01 93.9% 61.5%
3928050 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.01e-01 93.9% 51.9%
4941652 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.59 53.0 4.60e-01 97.6% 69.6%
2726885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 52.0 4.60e-01 93.9% 92.9%
3587732 9.6.1.0 beta barrels › Lipocalins/Streptavidin › Staphostatin › Staphostatin 0.59 48.0 4.38e-01 89.0% 97.3%
3719783 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 53.0 5.06e-01 100.0% 98.9%
4492958 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 50.0 4.64e-01 100.0% 75.2%
5036729 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.58 52.0 4.56e-01 97.6% 70.8%
3467450 9.1.1.34 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PAP_fibrillin 0.58 50.0 3.97e-01 100.0% 70.6%
3661190 9.23.1.4 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.57 50.0 3.99e-01 100.0% 72.6%
3975056 241.13.1.0 a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA 0.57 41.0 3.54e-01 87.8% 48.5%
3644180 5.1.5.98 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › b-prop_At3g26010-like 0.57 48.0 3.21e-01 95.1% 97.3%
4929056 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.56 40.0 4.06e-01 85.4% 76.2%
5027789 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.56 50.0 4.70e-01 98.8% 87.0%
3706101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 49.0 3.68e-01 100.0% 42.9%
4572937 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.55 48.0 3.85e-01 97.6% 60.6%
5012680 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.55 49.0 4.46e-01 97.6% 88.2%
4937587 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 47.0 3.82e-01 98.8% 48.5%
3415428 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.54 46.0 4.30e-01 96.3% 84.8%
3532938 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 39.0 2.61e-01 79.3% 23.5%
3631990 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.53 44.0 3.54e-01 91.5% 87.9%
3199320 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.53 41.0 3.71e-01 84.1% 87.8%
3168711 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.53 42.0 3.33e-01 93.9% 42.7%
3262446 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.52 42.0 4.11e-01 92.7% 78.5%
4438254 11.1.4.27 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › fn3_3 0.52 35.0 3.46e-01 97.6% 64.4%
185584 3385.1.1.1 beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 › AltA1 0.51 41.0 3.62e-01 92.7% 71.5%
3500010 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 43.0 3.11e-01 93.9% 78.3%