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YP_010358126.1

Arc-Vir

NC_062759__YP_010358126.1__M1M37-gp049__00049

Identity

Accession:
NC_062759 ↗
Protein ID:
YP_010358126.1 ↗
Kingdom:
archaea

Quality

89.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Hafunaviridae› Laminvirus› Halorubrum_tailed_virus_25

TaxID: 2878006

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-66
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x7gA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 47.0 4.16e-01 70.5% 48.9%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.65 43.0 3.74e-01 75.4% 44.2%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.65 46.0 3.22e-01 73.8% 50.8%
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.63 40.0 4.08e-01 73.8% 65.5%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 46.0 3.19e-01 78.7% 32.9%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.62 39.0 3.05e-01 80.3% 28.4%
4v19W00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.62 43.0 3.20e-01 75.4% 42.8%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.62 40.0 3.66e-01 70.5% 48.8%
6qdws00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.61 44.0 3.66e-01 77.0% 65.1%
2mzwA01 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.61 38.0 3.64e-01 73.8% 51.3%
5i2cB01 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.58 38.0 2.95e-01 73.8% 28.1%
3o4fH02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 43.0 2.98e-01 83.6% 24.8%
2kz0A01 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.57 39.0 3.79e-01 73.8% 100.0%
2i5tA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.57 42.0 3.17e-01 83.6% 70.4%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.56 43.0 3.61e-01 88.5% 82.2%
1vwxP00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.56 40.0 3.12e-01 78.7% 65.4%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.56 42.0 4.11e-01 82.0% 100.0%
5yk4A04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.55 41.0 3.29e-01 83.6% 46.3%
4gs5A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.55 40.0 3.41e-01 78.7% 74.3%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 34.0 3.37e-01 70.5% 54.4%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.16e-01 73.8% 50.4%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.54 38.0 3.06e-01 78.7% 62.6%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 3.17e-01 77.0% 42.9%
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 3.30e-01 83.6% 60.3%
3fvyA03 3.30.70.2600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 3.46e-01 75.4% 90.7%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.52 41.0 3.91e-01 85.2% 76.1%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 35.0 2.86e-01 73.8% 52.9%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 39.0 2.80e-01 86.9% 63.5%
2y8yA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.51 37.0 3.41e-01 82.0% 81.4%
5mp7A01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 43.0 3.17e-01 95.1% 78.4%
1u9yA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 38.0 2.90e-01 82.0% 76.7%
2af6A01 3.30.70.3180 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 3.16e-01 88.5% 99.2%
1i07A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 33.0 3.38e-01 80.3% 69.5%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4603329 101.1.2.108 ↗ alpha arrays › HTH › HTH › winged helix domain › PuR_N 0.69 45.0 4.12e-01 78.7% 51.2%
4033997 4070.1.1.3 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › DUF3267 0.68 47.0 3.52e-01 73.8% 68.4%
3960610 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.67 54.0 3.70e-01 88.5% 46.0%
3563894 59.1.4.2 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.65 40.0 2.38e-01 88.5% 8.6%
3583595 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.64 40.0 4.11e-01 70.5% 65.0%
3209636 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.63 46.0 4.11e-01 85.2% 54.4%
3985490 192.2.1.5 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.61 42.0 3.35e-01 72.1% 100.0%
3164240 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.61 45.0 4.35e-01 86.9% 68.6%
4029970 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.61 43.0 4.02e-01 77.0% 85.0%
4933496 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.60 42.0 4.04e-01 73.8% 67.1%
3444811 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.60 40.0 4.26e-01 75.4% 86.0%
4133554 304.24.1.21 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C+EFG_III 0.60 45.0 3.23e-01 83.6% 91.1%
3321517 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.59 46.0 2.81e-01 83.6% 67.9%
4212883 7573.1.1.4 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.59 45.0 3.13e-01 83.6% 62.0%
3627409 6166.1.1.1 ↗ alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.59 41.0 2.92e-01 73.8% 76.5%
3227661 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.58 49.0 3.18e-01 98.4% 42.5%
3425722 386.1.1.117 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.58 41.0 3.66e-01 88.5% 52.9%
3972123 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.58 44.0 3.73e-01 83.6% 77.1%
3703231 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.57 42.0 3.15e-01 80.3% 44.8%
3605264 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.57 42.0 2.63e-01 78.7% 19.1%
3998938 6110.1.1.1 ↗ alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.57 46.0 2.72e-01 88.5% 15.3%
3428560 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.57 41.0 4.33e-01 80.3% 100.0%
2782521 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.57 43.0 4.48e-01 82.0% 100.0%
3829526 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.57 43.0 3.98e-01 83.6% 77.5%
3322159 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.56 43.0 3.59e-01 85.2% 68.7%
3781870 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.56 43.0 3.92e-01 85.2% 68.2%
4002132 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.56 44.0 2.91e-01 93.4% 96.0%
3608162 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.56 40.0 3.02e-01 77.0% 46.1%
3793430 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.56 39.0 3.51e-01 77.0% 51.6%
3940272 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.56 41.0 2.58e-01 83.6% 38.3%
3318217 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.56 42.0 3.95e-01 85.2% 75.0%
5053551 3241.1.1.1 ↗ alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › GPP34 0.55 42.0 2.87e-01 80.3% 36.2%
4595166 5076.2.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.55 44.0 3.02e-01 85.2% 40.4%
4246264 2007.1.12.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › DHquinase_II 0.55 42.0 3.22e-01 88.5% 78.2%
3326552 148.1.3.8 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small 0.55 42.0 3.64e-01 85.2% 95.0%
3924318 6166.1.1.0 ↗ alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 0.55 41.0 2.86e-01 80.3% 60.0%
5069260 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.55 36.0 3.90e-01 70.5% 100.0%
3804378 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.54 43.0 4.06e-01 86.9% 76.0%
4023956 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.54 40.0 3.22e-01 80.3% 100.0%
4828613 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.54 42.0 3.90e-01 86.9% 69.1%
3644183 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 33.0 3.32e-01 70.5% 56.2%
4449508 331.2.1.13 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › DinI 0.54 36.0 3.43e-01 77.0% 55.0%
4067342 5069.1.1.15 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.54 45.0 2.83e-01 95.1% 52.4%
3818050 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.53 41.0 3.80e-01 83.6% 73.8%
4274656 263.1.1.0 ↗ a+b three layers › SRF-like › SRF-like › SRF-like 0.53 41.0 3.17e-01 83.6% 37.9%
3364928 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.53 41.0 2.62e-01 91.8% 25.1%
3601501 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.53 45.0 2.49e-01 100.0% 41.6%
3197950 256.1.1.0 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.52 35.0 3.95e-01 72.1% 95.6%
4033043 616.1.1.41 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 0.52 40.0 3.48e-01 93.4% 55.6%
3742561 7573.1.1.4 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.52 37.0 2.52e-01 73.8% 37.7%
3380863 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.52 41.0 2.39e-01 96.7% 13.0%
3229770 70.3.1.13 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET_TTL 0.52 41.0 2.85e-01 88.5% 43.3%
3423636 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.51 39.0 3.48e-01 86.9% 61.1%
4809699 3781.1.1.1 ↗ a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N 0.51 35.0 3.46e-01 82.0% 69.2%
3169544 3922.1.1.138 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Utp11 0.50 38.0 2.91e-01 85.2% 53.1%
3312089 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.50 38.0 3.31e-01 85.2% 85.0%
3717848 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.50 41.0 2.39e-01 100.0% 40.4%
3679276 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.50 40.0 3.95e-01 86.9% 87.3%
3598920 7573.1.1.0 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like 0.50 40.0 2.71e-01 86.9% 35.1%