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YP_010358443.1

Arc-Vir

NC_062762__YP_010358443.1__M1M40-gp69__00069

Identity

Accession:
NC_062762 ↗
Protein ID:
YP_010358443.1 ↗
Kingdom:
archaea

Quality

83.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kirjokansivirales› Haloferuviridae› Dpdavirus› Halorubrum_tailed_virus_29

TaxID: 2878010

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-95
PDB
Domain cluster: rep: MN180250.1__QHJ75439.1__X__00003__D7-80
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05016.22 best ParE_toxin 24.1 6.20e-05 89.0% 94.4%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.88 76.0 7.74e-01 91.2% 96.6%
3g5oC00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.85 71.0 7.26e-01 86.8% 90.8%
4ml0B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.84 72.0 7.27e-01 91.2% 97.8%
5cegD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.84 72.0 6.91e-01 90.1% 96.0%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.83 69.0 7.07e-01 87.9% 95.5%
3bpqD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.82 72.0 7.42e-01 93.4% 100.0%
3kxeA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.81 70.0 6.99e-01 91.2% 94.7%
5cw7B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.80 70.0 6.97e-01 92.3% 97.9%
3lp9A00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.72 45.0 3.34e-01 91.2% 25.6%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 44.0 5.03e-01 72.5% 90.9%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.66 55.0 4.94e-01 100.0% 64.8%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.65 42.0 4.75e-01 85.7% 88.1%
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 44.0 2.86e-01 70.3% 36.6%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 45.0 2.94e-01 73.6% 27.4%
2qcpX01 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.63 30.0 3.32e-01 86.8% 52.0%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 44.0 3.01e-01 72.5% 36.2%
4a18P00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.61 38.0 4.39e-01 96.7% 87.9%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 41.0 2.73e-01 70.3% 33.4%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.59 49.0 3.70e-01 91.2% 73.5%
1yprA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.59 50.0 4.59e-01 95.6% 89.6%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.59 52.0 4.61e-01 100.0% 90.2%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 45.0 3.04e-01 82.4% 42.7%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 41.0 2.75e-01 72.5% 39.5%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 46.0 4.11e-01 89.0% 89.3%
4q1vA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.57 42.0 2.64e-01 92.3% 15.6%
1m3qA01 3.30.310.40 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.56 37.0 3.82e-01 83.5% 70.8%
6h5bB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.55 47.0 4.41e-01 97.8% 89.9%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 39.0 2.67e-01 73.6% 31.4%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 47.0 4.35e-01 97.8% 90.8%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 37.0 3.39e-01 71.4% 63.4%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 43.0 3.85e-01 89.0% 90.4%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.89e-01 87.9% 87.4%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.49e-01 85.7% 83.8%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.53 37.0 3.91e-01 89.0% 81.9%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 44.0 3.81e-01 96.7% 84.6%
2jpiA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.51 33.0 3.30e-01 78.0% 62.5%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.96e-01 93.4% 71.1%
3a7sA00 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.51 43.0 3.43e-01 97.8% 66.2%
4l8oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 41.0 3.34e-01 86.8% 61.0%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 40.0 3.67e-01 89.0% 89.6%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075086 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.92 76.0 8.17e-01 89.0% 97.5%
4940748 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.92 77.0 8.12e-01 94.5% 96.4%
5014147 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.92 78.0 8.36e-01 87.9% 100.0%
5030204 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.92 70.0 7.74e-01 83.5% 96.0%
4937857 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.92 75.0 7.99e-01 87.9% 96.2%
5071213 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.92 75.0 7.99e-01 85.7% 96.2%
5063859 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.91 74.0 7.95e-01 85.7% 96.2%
4950220 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.90 80.0 8.06e-01 92.3% 96.7%
4968316 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.90 75.0 7.71e-01 86.8% 90.9%
5080208 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.89 79.0 8.03e-01 93.4% 95.6%
5018712 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.89 78.0 7.94e-01 92.3% 96.7%
3944846 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.89 84.0 7.65e-01 100.0% 89.6%
4966797 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.89 74.0 7.65e-01 86.8% 94.1%
4959351 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.89 75.0 7.97e-01 93.4% 100.0%
4948982 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.89 77.0 7.79e-01 91.2% 96.7%
4933908 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.89 73.0 7.54e-01 85.7% 95.3%
5044967 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.89 78.0 7.90e-01 92.3% 95.6%
5007067 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.88 74.0 7.49e-01 87.9% 96.7%
5032565 4312.1.1.10 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › YafQ_toxin 0.88 74.0 7.72e-01 87.9% 95.3%
5031617 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.88 71.0 7.53e-01 83.5% 97.5%
4937366 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.88 82.0 8.14e-01 98.9% 98.9%
5027803 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.88 73.0 7.73e-01 91.2% 98.8%
138730 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.88 76.0 7.74e-01 91.2% 96.6%
4949569 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.87 79.0 7.97e-01 94.5% 96.7%
4937762 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.87 75.0 7.61e-01 91.2% 96.7%
5080337 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.87 78.0 7.92e-01 93.4% 95.5%
4967722 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.87 73.0 7.71e-01 89.0% 100.0%
4937737 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.87 72.0 7.52e-01 86.8% 97.6%
4937945 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.87 82.0 7.81e-01 100.0% 98.1%
5080833 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.87 82.0 7.73e-01 100.0% 94.3%
3948814 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.87 82.0 7.75e-01 100.0% 91.4%
4966983 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.86 70.0 7.44e-01 84.6% 97.5%
4887373 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.86 70.0 7.48e-01 84.6% 97.5%
3986903 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.85 68.0 7.09e-01 83.5% 98.8%
4585524 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.85 71.0 7.21e-01 87.9% 97.8%
3602698 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.85 71.0 7.33e-01 87.9% 96.5%
4984297 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.85 71.0 7.21e-01 87.9% 90.0%
1297412 4312.1.1.10 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › YafQ_toxin 0.84 72.0 7.23e-01 91.2% 96.7%
2966315 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.84 72.0 7.08e-01 90.1% 94.7%
5065653 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.83 72.0 6.79e-01 90.1% 97.1%
4940076 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.83 77.0 7.06e-01 100.0% 94.8%
5028295 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.83 78.0 7.68e-01 100.0% 96.8%
1712440 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.83 72.0 6.84e-01 91.2% 94.2%
169853 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.83 72.0 7.51e-01 93.4% 100.0%
4463880 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.82 77.0 7.34e-01 100.0% 98.1%
4966645 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.82 59.0 6.65e-01 86.8% 97.1%
3945861 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.82 74.0 7.47e-01 94.5% 98.9%
4544637 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.82 72.0 7.17e-01 92.3% 96.8%
5061645 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.82 55.0 6.48e-01 84.6% 100.0%
4402856 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.81 71.0 7.14e-01 92.3% 100.0%
3955980 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.80 74.0 7.08e-01 100.0% 94.3%
1877168 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.80 70.0 7.01e-01 92.3% 96.7%
4968449 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.79 55.0 6.35e-01 84.6% 100.0%
3982278 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.79 67.0 6.77e-01 90.1% 100.0%
5061910 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.78 60.0 6.57e-01 84.6% 98.7%
3964028 4312.2.1.1 ↗ a+b two layers › RelE-like › YaeB-like › YaeB-like › TrmO_C 0.75 54.0 5.87e-01 86.8% 90.7%
3526903 4312.2.1.0 ↗ a+b two layers › RelE-like › YaeB-like › YaeB-like 0.74 61.0 5.92e-01 86.8% 87.9%
3276550 4312.2.1.0 ↗ a+b two layers › RelE-like › YaeB-like › YaeB-like 0.71 57.0 5.74e-01 85.7% 95.7%
5042309 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.71 56.0 5.67e-01 86.8% 84.4%
3626903 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.67 46.0 3.11e-01 70.3% 33.0%
3744348 5.1.4.331 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30861 0.66 47.0 2.89e-01 73.6% 32.4%
3888295 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.65 45.0 2.98e-01 70.3% 27.1%
3224529 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 45.0 3.00e-01 72.5% 30.3%
3554713 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 43.0 2.75e-01 70.3% 29.7%
4030473 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 45.0 2.86e-01 72.5% 30.9%
3742632 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.63 46.0 3.19e-01 75.8% 33.4%
3620870 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 52.0 5.09e-01 100.0% 83.0%
3938391 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.61 44.0 2.96e-01 74.7% 29.7%
3844573 5.1.3.170 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_IFT140_2nd 0.60 41.0 2.77e-01 71.4% 45.7%
3610662 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 40.0 2.88e-01 70.3% 58.5%
3717941 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 39.0 2.49e-01 73.6% 19.4%
3784858 5.1.4.362 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_VPS8 0.55 49.0 3.09e-01 97.8% 96.3%
4945195 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 47.0 4.35e-01 96.7% 85.2%
3272565 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 46.0 3.08e-01 96.7% 36.4%
3389929 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 46.0 3.97e-01 94.5% 72.9%
3266642 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 44.0 3.70e-01 94.5% 60.0%
3250819 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.51 43.0 3.75e-01 94.5% 67.6%
3468562 331.1.1.5 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.51 36.0 3.66e-01 82.4% 74.4%