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NC_067270.1__YP_010510457.1__OLP41_gp049__00049

Bact-Vir

NC_067270.1__YP_010510457.1__OLP41_gp049__00049

Identity

Accession:
NC_067270 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-81
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 51.0 4.58e-01 74.7% 58.3%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.70 55.0 4.16e-01 84.8% 85.8%
6i7sG01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.69 55.0 3.82e-01 86.1% 71.9%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 49.0 4.61e-01 74.7% 68.4%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 55.0 4.62e-01 88.6% 93.3%
2wpwC00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 48.0 3.17e-01 74.7% 98.8%
1vqzA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.66 46.0 4.44e-01 72.2% 95.5%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.66 57.0 4.40e-01 94.9% 66.7%
3qktD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 51.0 3.39e-01 83.5% 39.3%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.65 54.0 3.62e-01 88.6% 91.4%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 53.0 4.13e-01 89.9% 42.9%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.64 52.0 4.17e-01 87.3% 70.4%
1lqvB00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.64 44.0 3.43e-01 72.2% 75.7%
1f2uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 49.0 4.01e-01 83.5% 83.9%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 54.0 3.59e-01 96.2% 78.9%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.63 45.0 3.87e-01 75.9% 52.3%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.63 51.0 3.60e-01 88.6% 70.2%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.63 43.0 4.80e-01 88.6% 93.3%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 44.0 4.43e-01 74.7% 77.8%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.61 48.0 3.95e-01 86.1% 96.7%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 53.0 3.52e-01 98.7% 93.4%
5hz7A01 3.30.700.50 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.60 46.0 4.07e-01 82.3% 65.8%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.60 49.0 4.85e-01 89.9% 98.8%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 41.0 4.35e-01 73.4% 87.3%
1llnA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.59 46.0 3.64e-01 86.1% 93.7%
3klxB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 50.0 3.94e-01 98.7% 66.9%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.58 49.0 3.85e-01 96.2% 65.4%
3akhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 50.0 3.40e-01 100.0% 91.6%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 47.0 4.05e-01 100.0% 71.9%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 43.0 3.79e-01 84.8% 63.3%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 43.0 4.11e-01 87.3% 97.9%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.55 38.0 3.92e-01 70.9% 91.5%
3o6uC00 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.54 49.0 4.25e-01 98.7% 84.0%
3tojA01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.54 45.0 3.49e-01 91.1% 84.9%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 45.0 3.11e-01 100.0% 74.1%
1qo7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 46.0 3.00e-01 98.7% 46.8%
1tkjA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 47.0 3.29e-01 100.0% 92.1%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 3.60e-01 100.0% 63.9%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.94e-01 91.1% 54.1%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.52 41.0 3.49e-01 87.3% 66.9%
4rnyA03 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.51 43.0 3.75e-01 96.2% 66.4%
1jhjA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 44.0 3.59e-01 100.0% 95.0%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 41.0 3.20e-01 89.9% 46.7%
6j7cA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 40.0 3.17e-01 86.1% 82.5%
1tm0A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 39.0 3.23e-01 88.6% 84.1%
4cuaA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 39.0 3.18e-01 89.9% 97.2%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4934439 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.74 58.0 3.56e-01 83.5% 26.1%
3589805 243.8.1.0 a+b two layers › Cystatin-like › Uracil-DNA glycosylase inhibitor protein › Uracil-DNA glycosylase inhibitor protein 0.73 55.0 5.19e-01 79.7% 100.0%
4983770 244.3.1.3 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.72 50.0 4.43e-01 72.2% 91.8%
5002490 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.71 56.0 3.53e-01 83.5% 48.7%
5064039 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.71 56.0 3.89e-01 83.5% 48.4%
4008746 244.3.1.3 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.71 49.0 4.32e-01 72.2% 89.6%
4479921 244.3.1.3 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.70 48.0 4.24e-01 70.9% 89.6%
4944195 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.70 48.0 4.32e-01 72.2% 92.7%
4968725 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.69 54.0 3.52e-01 83.5% 50.0%
4940099 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.68 53.0 3.39e-01 83.5% 32.4%
4486450 244.3.1.4 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C 0.68 46.0 4.57e-01 70.9% 97.6%
3402152 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.68 59.0 5.23e-01 100.0% 96.7%
5028909 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.67 52.0 3.20e-01 83.5% 25.3%
5035736 71.1.1.26 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF3108 0.66 58.0 4.51e-01 96.2% 88.2%
4994210 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.66 49.0 3.18e-01 77.2% 37.8%
6736 244.3.1.4 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C 0.66 46.0 4.44e-01 72.2% 95.5%
2080477 244.3.1.4 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C 0.66 45.0 4.44e-01 72.2% 96.6%
5057328 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.65 51.0 3.21e-01 84.8% 26.6%
3856809 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.65 56.0 5.46e-01 100.0% 92.2%
1219772 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.64 44.0 3.36e-01 70.9% 75.5%
4974962 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 49.0 3.28e-01 83.5% 40.0%
3238997 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.64 51.0 4.32e-01 87.3% 94.0%
4966375 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 49.0 3.00e-01 83.5% 23.8%
4957228 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.63 49.0 4.16e-01 83.5% 100.0%
4957722 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.61 48.0 4.09e-01 87.3% 98.6%
3721847 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.61 46.0 2.80e-01 83.5% 38.8%
4949878 243.1.1.23 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3887 0.60 41.0 3.71e-01 70.9% 95.5%
5014687 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 41.0 4.47e-01 72.2% 100.0%
3823242 216.1.1.5 a+b two layers › UBC-like › UBC-like › UBC-like › BRE 0.60 52.0 4.59e-01 100.0% 82.5%
4216985 331.19.1.2 a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin_N 0.60 48.0 4.77e-01 98.7% 84.7%
1170462 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.59 41.0 4.55e-01 73.4% 100.0%
3588678 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.59 41.0 4.47e-01 73.4% 95.4%
4927714 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 47.0 3.08e-01 91.1% 54.1%
3868838 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.58 49.0 3.95e-01 94.9% 87.5%
1269295 5.1.2.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.58 48.0 3.21e-01 92.4% 45.4%
3589620 4312.1.1.11 a+b two layers › RelE-like › RelE-like › RelE-like › ParE-like_toxin 0.58 44.0 4.21e-01 81.0% 98.9%
5063704 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 39.0 4.23e-01 72.2% 95.4%
3654903 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 45.0 3.16e-01 87.3% 75.4%
3908192 3338.2.1.0 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.57 44.0 4.17e-01 86.1% 92.0%
3544943 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.57 44.0 4.14e-01 86.1% 92.0%
3342083 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 46.0 3.21e-01 92.4% 48.5%
3822963 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 49.0 4.25e-01 100.0% 95.4%
3580761 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 40.0 2.74e-01 73.4% 60.0%
4959385 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.56 38.0 3.94e-01 70.9% 100.0%
3978651 241.13.1.1 a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA › Sif 0.56 43.0 3.99e-01 84.8% 65.7%
3859372 9.13.1.0 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.56 46.0 4.29e-01 93.7% 85.7%
4988847 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 40.0 4.13e-01 78.5% 90.7%
4938788 11.1.4.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.55 39.0 3.87e-01 73.4% 74.1%
4018988 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.55 44.0 3.69e-01 87.3% 86.4%
4031476 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 44.0 4.03e-01 87.3% 88.3%
3662627 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.55 42.0 3.49e-01 84.8% 87.3%
3870987 9.13.1.0 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.55 43.0 4.13e-01 89.9% 93.7%
2764515 7579.1.1.49 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › GCE_fung 0.54 46.0 3.06e-01 100.0% 64.5%
5003064 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 40.0 3.59e-01 78.5% 60.0%
4965138 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.54 45.0 3.90e-01 98.7% 74.1%
3483586 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 38.0 2.57e-01 77.2% 52.2%
3300051 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.53 37.0 3.80e-01 100.0% 77.3%
3321190 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 44.0 3.03e-01 100.0% 95.2%
3297022 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.51 41.0 4.24e-01 92.4% 98.7%
3829885 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 41.0 2.82e-01 94.9% 80.3%
3875477 10.1.1.8 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.51 43.0 3.11e-01 92.4% 74.5%
3974426 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.50 42.0 4.17e-01 98.7% 97.6%