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NC_067270.1__YP_010510560.1__OLP41_gp178__00152

Bact-Vir

NC_067270.1__YP_010510560.1__OLP41_gp178__00152

Identity

Accession:
NC_067270 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bixzunavirus› Mycobacterium_phage_I3

TaxID: 2994057

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-70
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.69 54.0 4.28e-01 100.0% 41.6%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.64 56.0 3.87e-01 100.0% 43.7%
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 48.0 3.66e-01 100.0% 35.9%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.62 50.0 4.13e-01 89.4% 73.1%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.62 49.0 3.53e-01 90.9% 86.7%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 53.0 3.46e-01 100.0% 33.8%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.60 52.0 4.59e-01 100.0% 94.1%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.60 45.0 3.81e-01 81.8% 52.7%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 45.0 2.96e-01 84.8% 90.6%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 45.0 2.96e-01 84.8% 91.0%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 51.0 3.32e-01 100.0% 29.7%
3zsjA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 3.95e-01 98.5% 95.7%
6f91A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 41.0 2.76e-01 77.3% 69.4%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 47.0 4.60e-01 97.0% 97.4%
3ihpA03 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 50.0 3.19e-01 100.0% 29.6%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 3.86e-01 100.0% 95.1%
2ff4A03 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.57 41.0 3.62e-01 77.3% 84.7%
1itvA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.57 43.0 3.11e-01 81.8% 51.8%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 3.85e-01 98.5% 95.7%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 48.0 3.87e-01 100.0% 87.1%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 3.77e-01 100.0% 96.0%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 3.83e-01 100.0% 95.7%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.89e-01 89.4% 91.1%
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 3.71e-01 98.5% 95.0%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.70e-01 80.3% 79.8%
2dfuA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.55 35.0 3.92e-01 78.8% 100.0%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.67e-01 98.5% 93.6%
1g3pA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.54 42.0 3.84e-01 83.3% 80.7%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.54 42.0 4.43e-01 100.0% 100.0%
1bymA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.54 45.0 4.01e-01 97.0% 84.5%
3x3mA01 3.30.2390.20 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › Type VII secretion system EccB, repeat 1 domain 0.54 34.0 3.23e-01 78.8% 52.4%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.53 47.0 3.45e-01 100.0% 86.9%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.70e-01 84.8% 86.0%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.52 40.0 3.23e-01 84.8% 67.9%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.51 39.0 3.23e-01 84.8% 67.4%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.48e-01 84.8% 78.4%
1r21A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 40.0 3.56e-01 89.4% 88.0%
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.50 40.0 3.47e-01 86.4% 94.2%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.50 41.0 3.13e-01 100.0% 81.3%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3991735 9.1.1.49 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 0.71 58.0 4.81e-01 89.4% 99.1%
3511507 9.1.1.49 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 0.70 56.0 4.59e-01 86.4% 100.0%
3630385 9.1.1.49 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 0.69 58.0 4.84e-01 92.4% 97.4%
3762028 6.1.1.29 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › CysR_MRC2_N 0.63 48.0 3.81e-01 83.3% 87.1%
3908634 6.1.1.29 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › CysR_MRC2_N 0.62 46.0 3.84e-01 81.8% 96.8%
3244743 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.62 53.0 4.19e-01 100.0% 80.7%
5018197 3487.1.1.1 ↗ a+b three layers › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › M1E1E6-like 0.62 44.0 3.75e-01 77.3% 84.3%
3823449 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 52.0 3.50e-01 100.0% 33.1%
3589829 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.61 49.0 4.28e-01 90.9% 97.1%
3468148 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 53.0 3.83e-01 100.0% 48.7%
3230955 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 52.0 3.57e-01 100.0% 47.5%
3089462 6.1.1.29 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › CysR_MRC2_N 0.61 46.0 3.86e-01 84.8% 96.7%
3436173 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 51.0 3.36e-01 100.0% 30.4%
3453949 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 50.0 3.29e-01 100.0% 30.0%
4024708 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 51.0 3.22e-01 100.0% 28.8%
3498575 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.58 42.0 3.74e-01 78.8% 70.0%
426019 5.1.4.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Reg_prop 0.58 45.0 2.95e-01 84.8% 90.3%
3482451 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.58 49.0 3.67e-01 100.0% 64.2%
3217993 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.58 42.0 3.76e-01 77.3% 88.4%
5002449 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.37e-01 90.9% 96.4%
3302115 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.57 44.0 2.81e-01 83.3% 62.3%
2157212 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.56 47.0 3.85e-01 98.5% 95.7%
3630369 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.56 41.0 3.30e-01 78.8% 55.6%
4539117 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.56 41.0 3.23e-01 80.3% 61.3%
3974425 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.56 46.0 4.11e-01 92.4% 98.9%
None — 0.56 41.0 3.33e-01 78.8% 57.7%
4106342 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.55 41.0 3.73e-01 80.3% 83.3%
3920905 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.55 40.0 3.36e-01 80.3% 63.7%
3505545 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.55 44.0 3.64e-01 93.9% 95.6%
3743110 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.55 41.0 3.58e-01 81.8% 81.0%
4956695 4.15.1.0 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.55 45.0 4.28e-01 97.0% 100.0%
3349450 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.54 40.0 3.36e-01 80.3% 68.3%
None — 0.54 41.0 3.58e-01 83.3% 74.3%
3394987 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 46.0 3.45e-01 100.0% 82.2%
3474982 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.54 44.0 3.40e-01 98.5% 97.8%
3524786 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 41.0 3.01e-01 84.8% 70.8%
1032602 4.1.1.127 ↗ beta barrels › SH3 › SH3 › SH3 › DtxR 0.54 45.0 4.01e-01 97.0% 84.5%
3994222 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 45.0 3.31e-01 100.0% 57.0%
3405656 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 45.0 3.48e-01 100.0% 74.5%
3624733 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 40.0 3.14e-01 83.3% 93.3%
3478959 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.53 39.0 2.96e-01 84.8% 67.9%
3474631 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 44.0 3.32e-01 100.0% 65.0%
3625623 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 44.0 3.49e-01 100.0% 76.7%
3409506 633.23.1.3 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › L_HMGIC_fpl 0.51 38.0 2.85e-01 84.8% 68.5%
3820203 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.51 44.0 2.82e-01 95.5% 93.9%