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NC_068555.1__YP_010563463.1__OXC43_gp81__00038

Bact-Vir

NC_068555.1__YP_010563463.1__OXC43_gp81__00038

Identity

Accession:
NC_068555 ↗
Kingdom:
phage

Quality

80.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Efbeekayvirus› Klebsiella_phage_vB_KpP_FBKp27

TaxID: 2801837

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-85
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 39.0 3.55e-01 83.1% 45.6%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 46.0 3.88e-01 80.7% 90.1%
5n6lA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.59 47.0 3.32e-01 88.0% 95.9%
2chrA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 50.0 4.33e-01 95.2% 86.6%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 46.0 4.05e-01 88.0% 89.1%
7f79A01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.58 45.0 3.62e-01 84.3% 73.5%
1r0mA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 51.0 4.44e-01 100.0% 85.4%
2khxA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 40.0 4.13e-01 78.3% 77.2%
8in8C01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 44.0 3.17e-01 84.3% 93.1%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 49.0 4.50e-01 98.8% 97.3%
1jpdX01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 46.0 4.41e-01 92.8% 93.9%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 37.0 3.74e-01 98.8% 67.9%
1zj8A04 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.55 41.0 3.46e-01 80.7% 65.5%
4hiaA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 43.0 3.46e-01 89.2% 86.9%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 46.0 3.01e-01 96.4% 29.4%
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.68e-01 81.9% 62.5%
1jkmA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 39.0 2.64e-01 79.5% 78.2%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 40.0 4.09e-01 97.6% 87.8%
2xe4A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 40.0 2.65e-01 84.3% 30.1%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.52 41.0 3.48e-01 86.7% 71.7%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 35.0 3.59e-01 73.5% 72.8%
5l8sA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 38.0 2.80e-01 84.3% 42.0%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.50 30.0 3.34e-01 98.8% 77.8%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 39.0 3.53e-01 84.3% 76.3%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995758 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.80 41.0 4.07e-01 88.0% 48.2%
4024016 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 55.0 4.76e-01 98.8% 58.4%
3648413 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 41.0 4.00e-01 88.0% 55.6%
3275868 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 40.0 4.12e-01 100.0% 63.7%
5045708 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 38.0 4.12e-01 95.2% 68.6%
4995163 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.64 42.0 3.05e-01 72.3% 23.3%
3404941 220.1.1.15 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.63 50.0 4.02e-01 88.0% 87.1%
1560737 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.62 43.0 4.67e-01 96.4% 85.5%
3326221 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 53.0 5.07e-01 94.0% 91.6%
3596066 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 49.0 4.31e-01 86.7% 64.8%
4173753 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.61 46.0 3.35e-01 79.5% 96.9%
4011588 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.61 43.0 4.50e-01 79.5% 82.7%
4438762 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.60 40.0 4.03e-01 100.0% 67.1%
5041112 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 36.0 3.86e-01 100.0% 70.0%
3802472 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.59 49.0 3.31e-01 91.6% 26.9%
3706903 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 47.0 3.99e-01 94.0% 92.2%
5844 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.58 51.0 4.55e-01 98.8% 86.3%
3880275 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.57 48.0 3.62e-01 96.4% 54.2%
5055392 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.57 39.0 3.30e-01 71.1% 95.0%
4262043 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 37.0 3.85e-01 98.8% 71.2%
3178227 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 43.0 2.85e-01 84.3% 21.2%
3864913 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.55 47.0 3.93e-01 100.0% 87.1%
146272 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.54 36.0 3.69e-01 98.8% 68.7%
4015435 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.54 42.0 4.11e-01 100.0% 75.8%
3473974 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.54 44.0 3.80e-01 94.0% 86.9%
3735697 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.54 39.0 3.99e-01 78.3% 81.2%
133867 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.54 43.0 3.94e-01 92.8% 86.9%
4853066 2.1.1.22 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HIN 0.54 38.0 3.50e-01 74.7% 78.8%
4985704 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.53 43.0 3.52e-01 85.5% 75.2%
3533115 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.53 34.0 2.83e-01 75.9% 33.8%
3924083 2484.1.1.204 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 0.53 41.0 3.32e-01 85.5% 43.5%
3228525 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.53 36.0 3.37e-01 72.3% 54.5%
3262980 223.2.1.4 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.53 41.0 3.31e-01 86.7% 71.4%
3554664 11.1.1.206 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL17R_fnIII_D1 0.52 41.0 3.42e-01 89.2% 70.6%
4964487 218.1.1.12 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › PF26684 0.52 44.0 4.10e-01 100.0% 97.3%
3269422 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 38.0 2.68e-01 79.5% 30.4%
3638931 4955.1.1.0 ↗ a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.51 37.0 2.85e-01 81.9% 100.0%
3508989 2484.1.1.230 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 0.51 39.0 3.28e-01 85.5% 47.7%
5018173 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 33.0 3.12e-01 83.1% 55.0%
5026243 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.50 37.0 2.67e-01 83.1% 24.4%