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NC_069153.1__YP_010582623.1__PF627_gp45__00045

Bact-Vir

NC_069153.1__YP_010582623.1__PF627_gp45__00045

Identity

Accession:
NC_069153 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sarkviridae› Cornellvirus› Salmonella_virus_VSiP

TaxID: 2301721

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-54
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04448.18 best DUF551 28.5 3.20e-06 100.0% 88.2%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.71 59.0 4.67e-01 96.0% 80.0%
1zunB03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.71 60.0 4.72e-01 96.0% 78.3%
3mcaA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.70 59.0 4.71e-01 96.0% 76.5%
1r5bA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.69 58.0 4.53e-01 96.0% 77.3%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 57.0 4.67e-01 96.0% 75.5%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 56.0 4.63e-01 96.0% 76.6%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 53.0 5.43e-01 86.0% 100.0%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 53.0 4.48e-01 96.0% 71.7%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 50.0 4.36e-01 96.0% 69.0%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.62 42.0 4.48e-01 78.0% 88.1%
2ki8A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.62 49.0 3.91e-01 100.0% 87.2%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.61 50.0 4.77e-01 100.0% 100.0%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.60 43.0 4.55e-01 80.0% 100.0%
1ogyA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.60 48.0 3.79e-01 98.0% 93.5%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.25e-01 98.0% 93.2%
8e9gG01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.58 45.0 3.81e-01 94.0% 100.0%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 46.0 4.02e-01 100.0% 61.2%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.56 48.0 3.58e-01 100.0% 75.4%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.55 44.0 3.19e-01 94.0% 57.6%
4oifA02 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.55 37.0 2.46e-01 70.0% 35.0%
1yuzA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 35.0 3.74e-01 80.0% 92.1%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.52 43.0 3.39e-01 98.0% 74.8%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.21e-01 100.0% 40.1%
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.51 40.0 3.51e-01 98.0% 100.0%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 38.0 3.06e-01 86.0% 80.5%
4pqdA00 3.90.570.10 Alpha Beta › Alpha-Beta Complex › Sugar Binding Protein, Amyloid A4 Protein; Chain A › Amyloidogenic glycoprotein, heparin-binding domain 0.50 37.0 3.07e-01 86.0% 82.9%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1138674 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.71 59.0 4.67e-01 96.0% 80.0%
4650771 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.71 59.0 4.59e-01 96.0% 71.3%
3578245 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.69 58.0 4.44e-01 96.0% 71.7%
3960359 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.69 58.0 4.42e-01 96.0% 70.8%
5080510 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.69 57.0 4.70e-01 96.0% 75.8%
4932663 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.69 57.0 4.49e-01 96.0% 78.2%
3990253 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.69 56.0 4.26e-01 96.0% 66.7%
3270372 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.69 57.0 4.44e-01 96.0% 73.9%
4957377 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.68 52.0 4.89e-01 86.0% 76.2%
4288082 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.67 54.0 4.51e-01 92.0% 93.3%
3599398 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.67 54.0 4.47e-01 96.0% 69.0%
2561577 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.66 53.0 4.96e-01 88.0% 80.3%
5017735 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.66 53.0 4.27e-01 96.0% 69.1%
3989485 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.66 50.0 5.04e-01 84.0% 98.0%
3824699 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 53.0 4.89e-01 90.0% 90.8%
3774108 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 57.0 4.63e-01 100.0% 56.8%
3399965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 56.0 4.65e-01 100.0% 70.0%
3387378 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 51.0 4.44e-01 96.0% 89.4%
4890601 1.1.7.93 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D3, GTP_EFTU_D2 0.62 51.0 4.18e-01 96.0% 67.7%
4191690 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.61 53.0 5.09e-01 100.0% 91.4%
3980228 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 50.0 3.89e-01 100.0% 48.8%
4199419 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.60 48.0 3.81e-01 98.0% 92.0%
4665979 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.60 48.0 3.82e-01 98.0% 93.5%
222713 391.1.1.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.60 41.0 4.30e-01 80.0% 84.4%
4930010 1.1.7.141 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MazE_antitoxin 0.59 48.0 4.11e-01 100.0% 82.1%
3662509 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.58 46.0 3.68e-01 96.0% 61.7%
3338134 4.1.1.155 ↗ beta barrels › SH3 › SH3 › SH3 › CRR42-like 0.57 46.0 4.10e-01 92.0% 94.7%
3983524 274.1.1.13 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.56 40.0 2.95e-01 80.0% 57.0%
1316605 10.32.1.50 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF5077 0.54 44.0 3.36e-01 96.0% 72.5%
3599169 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 39.0 3.24e-01 84.0% 79.0%
4457771 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.52 42.0 3.79e-01 96.0% 90.7%
3250883 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.05e-01 82.0% 80.0%
3916871 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 43.0 3.18e-01 100.0% 37.9%
4070010 375.1.2.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin › Desulfoferrod_N 0.51 34.0 3.60e-01 88.0% 95.0%
4901024 1.2.1.0 ↗ beta barrels › cradle loop barrel › Capsid protein protrusion (P) domain › Capsid protein protrusion (P) domain 0.50 36.0 2.66e-01 78.0% 42.0%