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NC_069153.1__YP_010582636.1__PF627_gp58__00058

Bact-Vir

NC_069153.1__YP_010582636.1__PF627_gp58__00058

Identity

Accession:
NC_069153 ↗
Kingdom:
phage

Quality

77.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-38
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.82 59.0 4.80e-01 76.3% 44.8%
7k98E03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.78 62.0 5.12e-01 92.1% 50.0%
4qjvA03 3.30.70.3110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.77 56.0 4.80e-01 81.6% 48.4%
3pcoB04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.77 57.0 4.74e-01 92.1% 44.0%
2o0bA01 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.77 59.0 3.70e-01 86.8% 29.7%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.76 55.0 4.51e-01 78.9% 44.9%
4p72A04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.76 59.0 4.84e-01 94.7% 46.1%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.75 57.0 3.81e-01 84.2% 25.2%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.73 57.0 3.79e-01 81.6% 25.0%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.71 56.0 4.69e-01 94.7% 50.0%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 50.0 4.17e-01 78.9% 44.3%
3lduA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.69 52.0 3.40e-01 84.2% 18.9%
2f1fA02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.67 53.0 4.25e-01 89.5% 76.9%
3zx4A02 3.30.980.20 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 0.67 52.0 3.96e-01 84.2% 79.3%
3mnfA00 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.67 47.0 2.89e-01 76.3% 66.0%
2oh1C00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 51.0 3.43e-01 92.1% 79.1%
2p90A01 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.66 47.0 2.89e-01 76.3% 70.1%
2i0zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 50.0 3.07e-01 92.1% 16.2%
3zieD00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.62 45.0 3.69e-01 84.2% 79.3%
2gqfA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 49.0 3.01e-01 92.1% 80.7%
6u9hF02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.61 45.0 3.79e-01 89.5% 76.6%
4kr6A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.61 44.0 2.98e-01 84.2% 21.6%
2czrA01 3.40.1350.70 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain 0.60 43.0 3.32e-01 84.2% 30.2%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 3.56e-01 76.3% 40.6%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.60 47.0 3.72e-01 100.0% 87.1%
4jndA02 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.60 45.0 2.75e-01 84.2% 16.9%
2w82A03 1.10.10.1190 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Antirestriction protein ArdA, domain 3 0.59 42.0 3.64e-01 76.3% 90.3%
2e9yB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.59 43.0 2.62e-01 86.8% 21.2%
1khvA04 6.10.140.320 Special › Helix non-globular › Helix Hairpins › 0.59 42.0 3.78e-01 73.7% 74.1%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.59 46.0 3.65e-01 97.4% 63.5%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 41.0 3.71e-01 76.3% 54.4%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.57 41.0 3.45e-01 78.9% 40.5%
6n59A02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 40.0 3.26e-01 78.9% 53.6%
4w7sA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 48.0 2.90e-01 94.7% 89.2%
4aimA03 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.56 39.0 3.46e-01 84.2% 53.5%
4m0nA02 3.55.50.30 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.56 40.0 3.46e-01 89.5% 96.1%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.55 38.0 3.58e-01 78.9% 56.4%
1u5tA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.45e-01 84.2% 46.7%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.28e-01 78.9% 94.2%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.55 40.0 2.79e-01 92.1% 28.1%
3d8kD00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 42.0 2.52e-01 92.1% 14.7%
3ov5A00 3.55.50.70 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.54 38.0 3.23e-01 86.8% 96.4%
3petA00 2.160.20.120 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.53 40.0 2.63e-01 94.7% 18.3%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.24e-01 92.1% 43.9%
7bkea01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 35.0 3.06e-01 76.3% 43.2%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3280833 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.82 60.0 5.15e-01 78.9% 50.0%
4073474 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.80 63.0 4.89e-01 92.1% 40.0%
4185373 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.80 63.0 4.93e-01 92.1% 40.0%
5024775 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.80 58.0 4.55e-01 81.6% 37.5%
4986463 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.80 57.0 3.35e-01 78.9% 10.5%
5060568 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.79 59.0 5.09e-01 81.6% 51.7%
4309637 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.78 59.0 4.50e-01 81.6% 38.1%
3265217 4340.1.1.1 a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb5 0.78 56.0 4.85e-01 78.9% 53.3%
3962201 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.78 57.0 4.16e-01 78.9% 37.0%
4031431 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.77 57.0 4.80e-01 81.6% 47.7%
4050573 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.77 59.0 4.97e-01 89.5% 48.6%
3738415 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.76 55.0 4.29e-01 78.9% 36.5%
3207626 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.76 55.0 4.26e-01 78.9% 38.8%
4170201 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.75 57.0 4.23e-01 84.2% 34.7%
3274554 304.103.1.3 a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › MMADHC 0.74 57.0 3.76e-01 86.8% 87.3%
3386759 3433.1.2.0 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain 0.74 54.0 5.41e-01 84.2% 77.5%
4323104 304.22.1.0 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.72 51.0 4.52e-01 78.9% 50.0%
4087126 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.71 50.0 4.05e-01 81.6% 37.5%
4422689 304.22.1.0 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.71 54.0 4.39e-01 84.2% 44.0%
4977215 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.70 50.0 4.40e-01 78.9% 50.0%
4647064 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.69 51.0 4.48e-01 78.9% 53.3%
5019274 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.69 51.0 3.24e-01 78.9% 74.7%
4948522 3715.1.1.1 a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e 0.67 48.0 3.87e-01 84.2% 43.2%
3462716 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.65 44.0 4.53e-01 73.7% 93.3%
4968322 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.65 47.0 4.35e-01 84.2% 63.6%
5069378 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.63 48.0 4.12e-01 81.6% 47.7%
3163777 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.62 45.0 3.79e-01 86.8% 91.3%
5047775 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.62 49.0 3.91e-01 92.1% 41.2%
4975590 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 46.0 3.87e-01 89.5% 48.0%
4660623 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.61 43.0 3.34e-01 76.3% 47.8%
3814111 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.60 46.0 3.79e-01 89.5% 51.2%
3988793 101.1.2.93 alpha arrays › HTH › HTH › winged helix domain › HTH_Mga 0.60 44.0 3.57e-01 89.5% 41.1%
3449511 207.1.1.103 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_R13L1-DRL21 0.60 45.0 2.70e-01 89.5% 9.4%
5001118 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.60 41.0 2.71e-01 73.7% 15.2%
4956853 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 40.0 3.19e-01 71.1% 43.5%
3379312 2005.1.1.41 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C 0.60 44.0 2.87e-01 89.5% 45.9%
4563137 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.59 42.0 3.50e-01 81.6% 46.3%
4986386 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.59 45.0 3.11e-01 84.2% 32.4%
3981156 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.59 42.0 3.21e-01 78.9% 36.0%
3996858 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.58 39.0 3.38e-01 76.3% 41.5%
3738490 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.58 41.0 2.99e-01 73.7% 27.8%
4313224 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.58 40.0 3.31e-01 76.3% 65.0%
3996571 101.1.2.53 alpha arrays › HTH › HTH › winged helix domain › Mnd1 0.58 39.0 3.72e-01 73.7% 58.0%
3177309 101.1.2.7 alpha arrays › HTH › HTH › winged helix domain › HSF_DNA-bind 0.58 44.0 3.54e-01 89.5% 40.0%
4955445 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.56 42.0 3.73e-01 94.7% 51.4%
3216952 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 3.56e-01 92.1% 61.2%
4929483 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.56 43.0 3.16e-01 89.5% 28.3%
3174222 810.1.1.8 a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › PF25995 0.56 38.0 2.73e-01 73.7% 46.7%
4954942 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.55 44.0 3.75e-01 92.1% 96.9%
4939108 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 3.63e-01 94.7% 53.8%
3780237 101.1.2.265 alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.54 43.0 2.93e-01 97.4% 34.1%
5023592 873.1.1.1 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.54 38.0 2.87e-01 89.5% 28.5%
5001329 327.11.2.13 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd 0.53 37.0 3.11e-01 81.6% 43.5%
2979310 205.1.1.23 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Nqo3_Fer4 0.52 38.0 3.14e-01 78.9% 52.4%
4988179 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.52 38.0 3.38e-01 84.2% 50.0%
4631918 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 36.0 3.28e-01 94.7% 49.3%
2697 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.20e-01 92.1% 44.2%
5072831 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 37.0 3.35e-01 89.5% 55.6%
3808247 101.1.2.164 alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 0.50 35.0 3.31e-01 97.4% 56.9%