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NC_069154.1__YP_010582664.1__PF628_gp13__00013
Bact-VirNC_069154.1__YP_010582664.1__PF628_gp13__00013
Identity
- Accession:
- NC_069154 ↗
- Kingdom:
- phage
Quality
82.7
mean pLDDT
Taxonomy
TaxID: 2874884
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 219-351
Domain cluster:
rep: MW725301.1__QVW27647.1__PSDA2_00013__00013__D50-157
D2
high
residues 373-601_639-650
Domain cluster:
rep: LD_Run2_08_scaffold_35_prodigal-single.1__X__X__00177__D121-323
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13481.13 best | AAA_25 | 68.3 | 9.80e-19 | 71.4% | 87.2% |
D3
high
residues 657-744
D4
medium
residues 7-85
Domain cluster:
rep: OP038319.1__UXL91042.1__X__00042__D16-92
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dmwA01 | 3.30.450.50 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain | 0.52 | 35.0 | 3.15e-01 | 70.9% | 93.1% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 33.0 | 3.17e-01 | 100.0% | 53.1% |
| 4bwsF00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.51 | 37.0 | 3.96e-01 | 100.0% | 91.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031372 | 862.1.1.12 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › PF29905 | 0.79 | 72.0 | 5.25e-01 | 100.0% | 39.0% |
| 4950851 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 33.0 | 4.03e-01 | 78.5% | 100.0% |
| 3241190 | 2485.1.1.50 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_13 | 0.55 | 46.0 | 3.41e-01 | 93.7% | 63.3% |
| 4255188 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.54 | 38.0 | 3.68e-01 | 74.7% | 88.9% |
| 5076894 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.54 | 43.0 | 3.39e-01 | 88.6% | 54.1% |
| 3704667 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.53 | 43.0 | 2.96e-01 | 94.9% | 62.1% |
| 3943761 | 3227.1.1.1 ↗ | alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC | 0.52 | 41.0 | 2.68e-01 | 88.6% | 45.1% |
| 3827261 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 35.0 | 3.05e-01 | 72.2% | 84.6% |
| 3360896 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.51 | 44.0 | 3.94e-01 | 100.0% | 96.5% |
D5
medium
residues 86-209
Domain cluster:
rep: KY626163.1__ARK07396.1__X__00032__D88-188
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.74 | 59.0 | 5.16e-01 | 88.7% | 58.5% |
| 1gmuA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.70 | 39.0 | 5.02e-01 | 87.1% | 98.5% |
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 39.0 | 4.58e-01 | 72.6% | 78.8% |
| 2dt9A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.69 | 44.0 | 5.30e-01 | 72.6% | 98.7% |
| 3tj8A02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.69 | 41.0 | 5.03e-01 | 86.3% | 97.3% |
| 1a7gE00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.69 | 44.0 | 5.16e-01 | 75.8% | 96.3% |
| 4ushA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 42.0 | 4.58e-01 | 74.2% | 75.7% |
| 2hfvA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.66 | 40.0 | 4.95e-01 | 74.2% | 97.4% |
| 2hw0A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.66 | 49.0 | 5.10e-01 | 88.7% | 83.5% |
| 6lpnA03 | 3.30.70.2190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 50.0 | 5.20e-01 | 81.5% | 99.1% |
| 2bopA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.63 | 42.0 | 4.87e-01 | 76.6% | 97.6% |
| 1nbeB01 | 3.30.70.140 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aspartate carbamoyltransferase regulatory subunit, N-terminal domain | 0.63 | 40.0 | 4.51e-01 | 75.0% | 84.9% |
| 4p6qA02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.63 | 39.0 | 4.71e-01 | 75.8% | 100.0% |
| 1f08B00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.62 | 49.0 | 4.63e-01 | 88.7% | 71.0% |
| 8f4rA02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.61 | 42.0 | 4.70e-01 | 71.0% | 100.0% |
| 3aawA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.61 | 46.0 | 4.21e-01 | 79.8% | 71.5% |
| 1r9wA00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.60 | 47.0 | 4.61e-01 | 88.7% | 74.6% |
| 5d4nC00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 42.0 | 4.68e-01 | 90.3% | 94.9% |
| 3b49A00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.57 | 45.0 | 3.88e-01 | 86.3% | 78.4% |
| 7e6gA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.56 | 41.0 | 3.91e-01 | 76.6% | 74.5% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 41.0 | 4.44e-01 | 88.7% | 90.4% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 41.0 | 4.52e-01 | 88.7% | 97.0% |
| 2fiuA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 39.0 | 4.31e-01 | 73.4% | 93.7% |
| 1iujA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 38.0 | 4.13e-01 | 75.8% | 92.2% |
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 44.0 | 4.58e-01 | 91.1% | 98.2% |
| 1rjjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 37.0 | 3.91e-01 | 75.8% | 83.8% |
| 2ougA00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.52 | 39.0 | 3.74e-01 | 81.5% | 70.2% |
| 1ao0A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 45.0 | 3.46e-01 | 100.0% | 82.7% |
| 1ad2A01 | 3.30.190.20 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribosomal protein L1/L10, rRNA-binding domain | 0.50 | 37.0 | 3.75e-01 | 100.0% | 78.5% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031372 | 862.1.1.12 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › PF29905 | 0.81 | 76.0 | 6.33e-01 | 100.0% | 61.0% |
| 5011497 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.79 | 65.0 | 5.43e-01 | 90.3% | 53.5% |
| 3167609 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.67 | 42.0 | 5.07e-01 | 75.8% | 97.5% |
| 3225950 | 304.126.1.1 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.67 | 43.0 | 4.40e-01 | 75.8% | 66.7% |
| 5007295 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.67 | 41.0 | 4.94e-01 | 74.2% | 95.0% |
| 5209 | 304.5.1.6 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2007 | 0.66 | 40.0 | 5.00e-01 | 74.2% | 100.0% |
| 4945381 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.65 | 42.0 | 4.85e-01 | 75.8% | 92.9% |
| 3555669 | 304.126.1.1 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.65 | 43.0 | 4.39e-01 | 77.4% | 69.2% |
| 5016760 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.64 | 48.0 | 4.46e-01 | 79.0% | 100.0% |
| 3283072 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.64 | 51.0 | 4.09e-01 | 86.3% | 65.1% |
| 5010925 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.64 | 51.0 | 4.65e-01 | 85.5% | 98.2% |
| 3690951 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.64 | 53.0 | 3.95e-01 | 88.7% | 54.1% |
| 4927234 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.64 | 51.0 | 4.13e-01 | 86.3% | 63.7% |
| 3194712 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.63 | 52.0 | 3.99e-01 | 88.7% | 56.5% |
| 4011207 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.63 | 52.0 | 3.96e-01 | 88.7% | 57.2% |
| 4309132 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.62 | 51.0 | 4.14e-01 | 88.7% | 60.0% |
| 2792325 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.62 | 44.0 | 4.78e-01 | 74.2% | 99.0% |
| 5072024 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.62 | 50.0 | 3.96e-01 | 87.1% | 69.0% |
| 3677529 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.62 | 51.0 | 3.84e-01 | 88.7% | 53.7% |
| 3199163 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.61 | 48.0 | 4.29e-01 | 83.1% | 92.0% |
| 4319983 | 304.55.1.25 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Rep_1 | 0.61 | 50.0 | 4.07e-01 | 88.7% | 69.8% |
| 3968511 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.61 | 49.0 | 4.37e-01 | 85.5% | 90.3% |
| 4542034 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.61 | 47.0 | 4.58e-01 | 83.1% | 94.3% |
| 5065383 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.61 | 49.0 | 4.10e-01 | 87.9% | 71.8% |
| 4352943 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.61 | 45.0 | 4.70e-01 | 76.6% | 93.6% |
| 3267305 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.60 | 48.0 | 4.28e-01 | 84.7% | 98.3% |
| 4682347 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.60 | 49.0 | 3.86e-01 | 88.7% | 57.4% |
| 3285005 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.60 | 47.0 | 4.31e-01 | 84.7% | 97.6% |
| 3588046 | 304.55.1.14 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp | 0.60 | 49.0 | 3.87e-01 | 87.9% | 83.5% |
| 4475127 | 304.55.1.3 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Rep_OBD | 0.60 | 48.0 | 4.87e-01 | 88.7% | 85.6% |
| 5010788 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.60 | 49.0 | 3.97e-01 | 87.1% | 65.2% |
| 3733460 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.60 | 50.0 | 3.75e-01 | 88.7% | 56.3% |
| 3418283 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.60 | 42.0 | 4.59e-01 | 79.8% | 90.0% |
| 4618631 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.60 | 40.0 | 4.56e-01 | 78.2% | 98.8% |
| 3233980 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.59 | 41.0 | 4.63e-01 | 76.6% | 97.8% |
| None | — | 0.59 | 48.0 | 3.82e-01 | 87.1% | 88.4% | |
| 3273461 | 304.46.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G | 0.58 | 46.0 | 4.25e-01 | 85.5% | 75.0% |
| 5073819 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.56 | 46.0 | 3.88e-01 | 87.9% | 61.9% |
| 3728277 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.56 | 41.0 | 4.31e-01 | 75.0% | 91.7% |
| 5037616 | 886.1.1.2 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like | 0.56 | 44.0 | 4.13e-01 | 85.5% | 95.0% |
| 3924817 | 886.1.1.0 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain | 0.55 | 44.0 | 3.91e-01 | 87.1% | 78.9% |
| 4993583 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.54 | 36.0 | 3.73e-01 | 76.6% | 70.0% |
| 3882670 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.54 | 38.0 | 4.03e-01 | 74.2% | 95.5% |
| 3991099 | 886.1.1.0 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain | 0.53 | 42.0 | 3.73e-01 | 87.1% | 71.4% |
| 3198035 | 2003.1.5.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth | 0.51 | 35.0 | 2.86e-01 | 84.7% | 38.0% |
| 5060910 | 3325.1.1.1 ↗ | a+b two layers › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrA_inter | 0.50 | 37.0 | 3.68e-01 | 100.0% | 72.6% |