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NC_069154.1__YP_010582678.1__PF628_gp27__00027

Bact-Vir

NC_069154.1__YP_010582678.1__PF628_gp27__00027

Identity

Accession:
NC_069154 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sarkviridae› Klebsiella_phage_VLCpiS11a

TaxID: 2874884

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-80
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.79 49.0 5.72e-01 93.2% 87.0%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.78 49.0 4.50e-01 98.6% 50.0%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.73 49.0 4.02e-01 71.2% 40.7%
3b8mC02 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 29.0 2.60e-01 74.0% 29.8%
1yuiA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.58 32.0 3.59e-01 75.3% 70.4%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3478913 376.1.3.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.71 48.0 4.57e-01 74.0% 60.0%
3877617 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.68 46.0 4.43e-01 74.0% 61.2%
3484196 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.64 41.0 4.24e-01 87.7% 68.6%
3788910 376.1.3.11 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H_2 0.56 40.0 3.00e-01 76.7% 35.3%