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NC_069155.1__YP_010582714.1__PF629_gp06__00006

Bact-Vir

NC_069155.1__YP_010582714.1__PF629_gp06__00006

Identity

Accession:
NC_069155 ↗
Kingdom:
phage

Quality

94.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sarkviridae› Otakuvirus› Serratia_phage_Tsm2

TaxID: 2787014

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-90
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fgoA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.73 46.0 3.63e-01 98.9% 31.5%
2qdeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 56.0 4.90e-01 100.0% 97.1%
3tj4A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 52.0 4.68e-01 96.6% 96.7%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.57 46.0 4.56e-01 94.4% 81.1%
1n08A00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.55 38.0 3.21e-01 71.9% 72.1%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 41.0 3.23e-01 85.4% 98.6%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 4.35e-01 94.4% 92.2%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 41.0 3.60e-01 98.9% 55.1%
1jllB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 45.0 3.79e-01 100.0% 62.6%
7pikC01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 44.0 3.39e-01 97.8% 65.7%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3376912 2484.1.1.165 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 46.0 2.94e-01 83.1% 89.9%
3639482 220.1.1.211 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7612 0.59 35.0 3.01e-01 96.6% 36.4%
4943448 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 43.0 3.92e-01 82.0% 95.0%
3350473 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 33.0 3.70e-01 92.1% 77.1%
396 2.2.1.8 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Pertus-S5-tox 0.54 40.0 3.93e-01 78.7% 74.5%
3315568 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.53 38.0 4.10e-01 97.8% 95.7%
3326324 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.52 37.0 4.07e-01 96.6% 95.7%
4106254 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.52 43.0 3.87e-01 92.1% 88.0%
3203652 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.50 45.0 2.95e-01 100.0% 97.4%
3398694 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.50 40.0 3.81e-01 98.9% 73.3%