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NC_069753.1__YP_010598028.1__PM407_gp07__00007

Bact-Vir

Identity

Accession:: NC_069753 ↗
Kingdom:: phage

Quality

87.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Septimatrevirus› Pseudomonas_phage_PSV3

TaxID: 3003632

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-69

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2esnA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.67	40.0	3.55e-01	90.6%	41.6%
3k4oA00	3.40.1160.10	Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like	0.57	37.0	2.51e-01	87.5%	16.5%
4toiA01	3.40.50.10490	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1	0.53	39.0	2.78e-01	82.8%	27.5%
2hekA01	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.51	38.0	2.54e-01	82.8%	35.9%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3463832	386.1.1.334 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Utp11	0.71	55.0	4.31e-01	100.0%	40.8%
5063700	3843.1.1.32 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › CstA	0.65	49.0	3.85e-01	96.9%	39.2%
2429478	5050.1.1.2 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2	0.64	56.0	3.77e-01	98.4%	52.3%
5013274	5011.1.1.0 ↗	extended segments › Bacterial ba3 type cytochrome c oxidase subunit IIa › Bacterial ba3 type cytochrome c oxidase subunit IIa › Bacterial ba3 type cytochrome c oxidase subunit IIa	0.63	47.0	4.23e-01	93.8%	58.8%
3943611	601.27.1.2 ↗	alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like › DUF3053	0.62	53.0	3.81e-01	100.0%	68.8%
4019703	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.62	44.0	3.21e-01	96.9%	27.4%
3305761	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.56	39.0	2.93e-01	92.2%	29.7%
3410469	304.20.1.3 ↗	a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D6	0.55	37.0	2.94e-01	70.3%	95.0%
3938199	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.54	46.0	3.46e-01	100.0%	45.7%
4383623	2004.1.1.32 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C,UvrB	0.54	45.0	3.19e-01	90.6%	29.0%
1016743	3255.1.1.1 ↗	a/b three-layered sandwiches › a/b domain in flagellar biosynthesis protein flhA › a/b domain in flagellar biosynthesis protein flhA › a/b domain in flagellar biosynthesis protein flhA › FHIPEP	0.53	31.0	2.70e-01	81.2%	33.3%
5057162	504.1.1.0 ↗	a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB	0.51	40.0	3.26e-01	87.5%	92.8%
3279780	2008.1.1.20 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2	0.51	38.0	2.76e-01	84.4%	80.8%