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NC_069754.1__YP_010598100.1__PM408_gp16__00016
Bact-VirNC_069754.1__YP_010598100.1__PM408_gp16__00016
Identity
- Accession:
- NC_069754 ↗
- Kingdom:
- phage
Quality
83.5
mean pLDDT
Taxonomy
TaxID: 3003632
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-169
Domain cluster:
rep: IMGVR_UViG_2554235476_000008-2554235476-2556095468__D93-276
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.63 | 54.0 | 5.38e-01 | 92.2% | 97.7% |
| 3tj8A02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.59 | 29.0 | 3.94e-01 | 84.4% | 98.6% |
| 4i68A00 | 3.30.70.1800 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 28.0 | 3.66e-01 | 88.6% | 84.4% |
| 1ayeA01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.56 | 26.0 | 3.32e-01 | 80.8% | 72.7% |
| 2go8A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 23.0 | 3.27e-01 | 95.2% | 83.8% |
| 2v4jB01 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 31.0 | 3.47e-01 | 99.4% | 72.0% |
| 1x4dA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 31.0 | 3.72e-01 | 79.6% | 96.1% |
| 2wbrA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 27.0 | 3.53e-01 | 81.4% | 96.6% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4962598 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.88 | 84.0 | 8.43e-01 | 98.8% | 100.0% |
| 4959587 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.70 | 66.0 | 6.57e-01 | 100.0% | 98.8% |
| 3989046 | 862.1.1.8 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP-TOTE | 0.68 | 62.0 | 5.58e-01 | 98.2% | 99.6% |
| 3669120 | 304.8.1.58 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ABCA12_C | 0.60 | 25.0 | 3.47e-01 | 96.4% | 77.5% |
| 5029940 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.57 | 27.0 | 3.56e-01 | 98.2% | 85.0% |
| 3831785 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.56 | 24.0 | 3.04e-01 | 96.4% | 62.0% |
| 3398956 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.55 | 25.0 | 3.45e-01 | 95.8% | 86.3% |
| 5063221 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 25.0 | 3.51e-01 | 80.2% | 98.6% |
| 3598887 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 26.0 | 3.60e-01 | 79.6% | 100.0% |
| 3815332 | 304.9.1.84 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28975 | 0.51 | 31.0 | 3.45e-01 | 91.6% | 77.6% |
| 3272707 | 327.11.2.39 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_3 | 0.51 | 22.0 | 3.11e-01 | 96.4% | 93.8% |
| 3761601 | 304.9.1.84 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28975 | 0.51 | 29.0 | 3.63e-01 | 88.6% | 100.0% |
| 3385766 | 304.28.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG | 0.50 | 27.0 | 3.50e-01 | 79.0% | 94.4% |
| 4993423 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.50 | 24.0 | 3.41e-01 | 77.8% | 100.0% |
D2
high
residues 188-271
Domain cluster:
rep: IMGVR_UViG_3300014491_000362-3300014491-Ga0182014_100193425__D116-194
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22763.2 best | NrS1-1_pol-like_HBD | 30.3 | 4.10e-07 | 63.1% | 76.6% |
D3
medium
residues 329-414
Domain cluster:
rep: NC_069755.1__YP_010598232.1__PM409_gp62__00062__D60-159