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NC_069754.1__YP_010598108.1__PM408_gp24__00024

Bact-Vir

NC_069754.1__YP_010598108.1__PM408_gp24__00024

Identity

Accession:
NC_069754 ↗
Kingdom:
phage

Quality

94.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Septimatrevirus› Pseudomonas_phage_PSV3

TaxID: 3003632

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-74
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 41.0 3.54e-01 95.3% 43.5%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 37.0 3.33e-01 84.4% 46.2%
1qu6A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 36.0 3.41e-01 85.9% 55.3%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 37.0 2.86e-01 82.8% 30.6%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.52 31.0 3.51e-01 76.6% 84.1%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 36.0 2.83e-01 81.2% 32.9%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 34.0 3.01e-01 87.5% 43.7%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3309178 109.3.1.164 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.57 42.0 3.11e-01 82.8% 33.7%
3376271 64.1.1.8 ↗ beta meanders › WW domain-like › WW domain › WW domain › DUF7028 0.56 36.0 3.30e-01 85.9% 47.1%
3456692 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.56 37.0 3.88e-01 85.9% 76.3%
3300651 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.56 41.0 3.05e-01 84.4% 32.5%
3651210 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 39.0 4.08e-01 85.9% 81.7%
3184536 223.2.1.32 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.55 40.0 3.29e-01 96.9% 39.2%
4935553 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.55 32.0 2.41e-01 100.0% 21.3%
3926017 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 34.0 3.63e-01 82.8% 70.9%
3673029 105.1.1.18 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › DUF7028 0.54 35.0 3.53e-01 85.9% 64.6%
3664711 252.1.1.2 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › DUF7028 0.54 35.0 3.50e-01 85.9% 64.6%
3786336 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.53 43.0 3.22e-01 90.6% 70.9%
3310407 386.1.1.117 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.53 32.0 3.51e-01 82.8% 78.0%
3656139 64.1.1.8 ↗ beta meanders › WW domain-like › WW domain › WW domain › DUF7028 0.52 34.0 3.50e-01 82.8% 71.7%
3472035 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 37.0 2.92e-01 78.1% 86.0%
4117447 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.51 42.0 2.84e-01 93.8% 69.8%
3547457 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.50 37.0 2.61e-01 81.2% 36.4%
3259570 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 42.0 2.72e-01 100.0% 38.3%