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NC_069754.1__YP_010598116.1__PM408_gp32__00032

Bact-Vir

NC_069754.1__YP_010598116.1__PM408_gp32__00032

Identity

Accession:
NC_069754 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Septimatrevirus› Pseudomonas_phage_PSV3

TaxID: 3003632

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 116-218
PDB
Domain cluster: rep: OP712466.1__WBF76852.1__PSV3_00150__00047__D19-120
D2 medium residues 1-111
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l8uA00 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.55 30.0 2.72e-01 91.9% 38.3%
1ghhA00 3.30.910.10 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › DinI-like 0.52 26.0 2.91e-01 90.1% 59.3%
5b7hB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 27.0 2.76e-01 92.8% 50.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
8002 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 23.0 4.39e-01 74.8% 100.0%
3885765 375.2.1.3 ↗ few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like › DZR 0.63 26.0 3.84e-01 74.8% 83.6%
4944118 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 26.0 3.85e-01 76.6% 86.8%
3610910 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 28.0 3.86e-01 75.7% 94.5%
5076714 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 23.0 3.27e-01 76.6% 85.5%