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NC_069754.1__YP_010598122.1__PM408_gp38__00038
Bact-VirNC_069754.1__YP_010598122.1__PM408_gp38__00038
Identity
- Accession:
- NC_069754 ↗
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Taxonomy
TaxID: 3003632
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-163
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x9mA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.69 | 48.0 | 3.93e-01 | 91.5% | 41.2% |
| 1e3mB02 | 3.30.420.110 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain | 0.63 | 36.0 | 3.65e-01 | 93.8% | 54.2% |
| 2wjsA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 42.0 | 3.69e-01 | 97.7% | 49.2% |
| 5m1pB00 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.59 | 41.0 | 3.61e-01 | 99.2% | 48.1% |
| 7ue1B01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 38.0 | 3.64e-01 | 91.5% | 58.3% |
| 3kksB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 39.0 | 3.67e-01 | 94.6% | 57.2% |
| 4o5fA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 35.0 | 3.51e-01 | 92.2% | 60.3% |
| 3d2fA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 35.0 | 4.00e-01 | 92.2% | 91.4% |
| 1xm8A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 41.0 | 3.31e-01 | 81.4% | 87.4% |
| 1fr3A00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.53 | 23.0 | 2.96e-01 | 96.9% | 70.1% |
| 1vw3B01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 23.0 | 2.63e-01 | 96.9% | 53.8% |
| 2xlpB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 38.0 | 2.89e-01 | 79.1% | 78.3% |
| 3ll3B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 44.0 | 3.59e-01 | 94.6% | 96.7% |
| 4hkqA04 | 3.10.20.370 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 30.0 | 3.72e-01 | 93.8% | 98.7% |
| 3h6eB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 36.0 | 4.10e-01 | 93.8% | 98.0% |
| 3qdkB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 43.0 | 3.43e-01 | 94.6% | 97.4% |
| 1v43A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 21.0 | 2.79e-01 | 96.9% | 68.8% |
| 1xc3A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 37.0 | 4.08e-01 | 90.7% | 98.1% |
ECOD (69)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4945471 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 30.0 | 4.19e-01 | 93.8% | 81.5% |
| None | — | 0.66 | 38.0 | 2.37e-01 | 95.3% | 10.7% | |
| 4513290 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.66 | 38.0 | 3.62e-01 | 95.3% | 47.7% |
| 4627306 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.65 | 38.0 | 3.42e-01 | 94.6% | 42.3% |
| 4300532 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.64 | 38.0 | 3.83e-01 | 95.3% | 56.3% |
| 4228437 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.64 | 37.0 | 3.69e-01 | 94.6% | 55.4% |
| 4098907 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.64 | 38.0 | 3.61e-01 | 95.3% | 49.3% |
| 4171259 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.63 | 39.0 | 3.65e-01 | 95.3% | 48.8% |
| 4105268 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.63 | 37.0 | 3.59e-01 | 94.6% | 50.3% |
| 4428745 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.63 | 39.0 | 3.69e-01 | 94.6% | 51.0% |
| 4368826 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.63 | 39.0 | 3.61e-01 | 94.6% | 48.8% |
| 4564297 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.63 | 39.0 | 3.65e-01 | 94.6% | 50.3% |
| None | — | 0.63 | 39.0 | 2.44e-01 | 94.6% | 11.3% | |
| 4559745 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.63 | 38.0 | 3.59e-01 | 94.6% | 48.8% |
| 4134120 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.63 | 39.0 | 3.61e-01 | 94.6% | 49.4% |
| 4119119 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.62 | 38.0 | 3.60e-01 | 94.6% | 49.7% |
| 4378342 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.62 | 38.0 | 2.62e-01 | 94.6% | 17.0% |
| 4051481 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.62 | 38.0 | 3.62e-01 | 94.6% | 51.0% |
| 4282238 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 37.0 | 2.31e-01 | 95.3% | 10.1% |
| 4337348 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.62 | 36.0 | 3.43e-01 | 94.6% | 47.1% |
| 4185079 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.61 | 37.0 | 3.54e-01 | 94.6% | 49.7% |
| 4980198 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 39.0 | 3.62e-01 | 94.6% | 50.6% |
| 4128658 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.61 | 37.0 | 3.35e-01 | 95.3% | 44.0% |
| 3926267 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 40.0 | 3.72e-01 | 95.3% | 53.8% |
| 4452125 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.60 | 37.0 | 3.49e-01 | 94.6% | 49.7% |
| 4367636 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.60 | 40.0 | 3.66e-01 | 95.3% | 51.5% |
| 5060078 | 2484.1.1.291 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_V | 0.60 | 39.0 | 2.45e-01 | 94.6% | 12.1% |
| 2575628 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.60 | 39.0 | 3.68e-01 | 93.0% | 54.9% |
| 3939156 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.60 | 40.0 | 3.49e-01 | 95.3% | 45.1% |
| 4488755 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.60 | 37.0 | 3.52e-01 | 94.6% | 50.3% |
| None | — | 0.60 | 35.0 | 2.23e-01 | 93.8% | 10.4% | |
| 4240997 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.60 | 37.0 | 3.56e-01 | 94.6% | 53.1% |
| 4606238 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.60 | 37.0 | 3.42e-01 | 94.6% | 47.3% |
| 4962752 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.60 | 37.0 | 3.50e-01 | 94.6% | 49.4% |
| 4093695 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.60 | 37.0 | 3.58e-01 | 94.6% | 53.3% |
| 4122754 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.60 | 39.0 | 3.68e-01 | 94.6% | 52.5% |
| 3925232 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.59 | 40.0 | 3.54e-01 | 95.3% | 47.4% |
| 5061488 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.59 | 40.0 | 3.67e-01 | 95.3% | 53.3% |
| 4969653 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 37.0 | 3.46e-01 | 94.6% | 49.4% |
| 3257564 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 40.0 | 3.40e-01 | 95.3% | 44.0% |
| 4296830 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.59 | 36.0 | 3.43e-01 | 94.6% | 49.7% |
| 4517192 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 40.0 | 3.49e-01 | 96.1% | 46.8% |
| 4181298 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.59 | 36.0 | 2.49e-01 | 95.3% | 17.3% |
| 5062619 | 2484.1.1.68 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 | 0.58 | 49.0 | 4.18e-01 | 94.6% | 57.5% |
| 3937782 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.58 | 39.0 | 3.59e-01 | 95.3% | 53.3% |
| 4108225 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.58 | 36.0 | 3.58e-01 | 94.6% | 56.4% |
| 3646441 | 2484.1.1.205 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 | 0.57 | 37.0 | 4.00e-01 | 93.8% | 77.3% |
| 3927914 | 2484.1.1.212 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RT_RNaseH | 0.57 | 48.0 | 4.73e-01 | 99.2% | 85.2% |
| 3587844 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 39.0 | 4.16e-01 | 93.8% | 79.1% |
| 3930361 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.57 | 47.0 | 4.78e-01 | 99.2% | 90.4% |
| 3445076 | 2484.1.1.205 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 | 0.57 | 37.0 | 3.28e-01 | 93.8% | 45.9% |
| 4274404 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.56 | 37.0 | 3.49e-01 | 94.6% | 52.7% |
| 4936812 | 2484.1.1.49 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N | 0.55 | 40.0 | 4.07e-01 | 91.5% | 76.8% |
| 4544568 | 719.1.1.5 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 | 0.55 | 32.0 | 3.46e-01 | 89.1% | 66.4% |
| 3550970 | 719.1.1.5 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 | 0.54 | 31.0 | 3.39e-01 | 89.1% | 66.4% |
| 5071337 | 2484.1.1.49 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N | 0.53 | 39.0 | 4.33e-01 | 92.2% | 95.2% |
| 4055808 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.53 | 44.0 | 4.43e-01 | 99.2% | 88.5% |
| 3940179 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 39.0 | 3.44e-01 | 95.3% | 52.6% |
| 5052285 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 37.0 | 4.03e-01 | 99.2% | 87.6% |
| 4142499 | 2484.1.1.11 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p | 0.53 | 38.0 | 3.93e-01 | 89.1% | 78.9% |
| 5060181 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 32.0 | 3.86e-01 | 92.2% | 92.9% |
| 3935434 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.52 | 44.0 | 4.40e-01 | 99.2% | 89.2% |
| 4983641 | 2484.1.1.49 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N | 0.52 | 42.0 | 3.97e-01 | 91.5% | 72.7% |
| 4636438 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.51 | 37.0 | 3.87e-01 | 92.2% | 80.0% |
| 4219295 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.51 | 37.0 | 3.72e-01 | 93.0% | 74.6% |
| 3787188 | 2484.1.1.6 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N | 0.51 | 44.0 | 3.34e-01 | 94.6% | 96.4% |
| 4649119 | 2484.1.1.153 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1744 | 0.50 | 44.0 | 3.37e-01 | 93.0% | 55.3% |
| 3878642 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.50 | 40.0 | 3.59e-01 | 92.2% | 60.0% |
| 3756491 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 38.0 | 4.21e-01 | 92.2% | 100.0% |