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NC_069754.1__YP_010598127.1__PM408_gp43__00043
Bact-VirNC_069754.1__YP_010598127.1__PM408_gp43__00043
Identity
- Accession:
- NC_069754 ↗
- Kingdom:
- phage
Quality
86.8
mean pLDDT
Taxonomy
TaxID: 3003632
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 290-367
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.73 | 51.0 | 4.90e-01 | 100.0% | 64.4% |
| 2pp6A02 | 2.40.10.210 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) | 0.68 | 44.0 | 4.85e-01 | 100.0% | 82.5% |
| 2f1lA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.67 | 49.0 | 4.66e-01 | 100.0% | 66.3% |
| 2dyiA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.63 | 42.0 | 4.11e-01 | 100.0% | 63.1% |
| 2nwaA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.62 | 46.0 | 4.76e-01 | 100.0% | 82.7% |
| 2zzeA03 | 2.40.30.130 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.62 | 43.0 | 4.03e-01 | 100.0% | 57.1% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.61 | 45.0 | 4.52e-01 | 98.7% | 78.5% |
| 1ylnA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 46.0 | 4.10e-01 | 100.0% | 61.4% |
| 2apoA03 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 42.0 | 4.02e-01 | 84.6% | 68.5% |
| 2zu2A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 43.0 | 4.02e-01 | 100.0% | 66.3% |
| 1ohvA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 38.0 | 3.04e-01 | 100.0% | 33.7% |
| 3kdgA02 | 3.30.1370.100 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › MutL, C-terminal domain, regulatory subdomain | 0.55 | 38.0 | 3.62e-01 | 80.8% | 59.6% |
| 2aneH00 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.54 | 46.0 | 4.24e-01 | 100.0% | 76.1% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 41.0 | 3.67e-01 | 82.1% | 67.0% |
| 5xd6B01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 40.0 | 3.86e-01 | 100.0% | 68.1% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.53 | 46.0 | 4.00e-01 | 100.0% | 61.6% |
| 3qupA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 37.0 | 3.77e-01 | 98.7% | 77.0% |
| 7cayA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.53 | 43.0 | 4.04e-01 | 100.0% | 74.0% |
| 4evuB00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.52 | 34.0 | 3.60e-01 | 83.3% | 76.5% |
| 2clqA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 38.0 | 3.79e-01 | 100.0% | 72.9% |
| 3fbqA02 | 2.60.40.1640 | Mainly Beta › Sandwich › Immunoglobulin-like › Conserved domain protein. | 0.52 | 41.0 | 3.44e-01 | 100.0% | 48.9% |
| 2p04A00 | 3.30.450.260 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain | 0.52 | 41.0 | 3.78e-01 | 88.5% | 86.0% |
| 3dh3A02 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.52 | 44.0 | 3.44e-01 | 98.7% | 42.0% |
| 6cz4A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 40.0 | 3.96e-01 | 100.0% | 77.9% |
| 2b9kA00 | 2.20.20.70 | Mainly Beta › Single Sheet › Anthopleurin-A › | 0.52 | 30.0 | 3.55e-01 | 82.1% | 91.5% |
| 3laeA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.52 | 41.0 | 4.11e-01 | 88.5% | 93.8% |
| 3gkeA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.51 | 39.0 | 2.85e-01 | 80.8% | 71.9% |
| 7x7zA01 | 2.40.480.10 | Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like | 0.51 | 39.0 | 3.30e-01 | 84.6% | 98.6% |
| 3qfwA01 | 3.30.70.150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain | 0.51 | 38.0 | 3.54e-01 | 80.8% | 62.7% |
| 4wovA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 37.0 | 3.70e-01 | 100.0% | 75.0% |
| 2pliA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 41.0 | 4.06e-01 | 89.7% | 92.9% |
| 2e7vA01 | 3.30.70.960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain | 0.50 | 38.0 | 3.55e-01 | 84.6% | 69.5% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3965861 | 1.1.7.129 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Rcc01698_C | 0.83 | 69.0 | 6.53e-01 | 100.0% | 76.7% |
| 4395103 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.76 | 52.0 | 4.94e-01 | 100.0% | 61.1% |
| 4521547 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.72 | 48.0 | 4.63e-01 | 100.0% | 60.0% |
| 4066771 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.70 | 51.0 | 4.82e-01 | 100.0% | 63.2% |
| 4353877 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.70 | 51.0 | 4.81e-01 | 100.0% | 63.2% |
| 4163756 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.70 | 51.0 | 4.77e-01 | 100.0% | 63.2% |
| 4553723 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.69 | 50.0 | 4.65e-01 | 100.0% | 62.1% |
| 4214150 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.67 | 50.0 | 4.43e-01 | 100.0% | 55.5% |
| 4085735 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.66 | 46.0 | 4.42e-01 | 100.0% | 63.3% |
| 4211588 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 52.0 | 3.17e-01 | 100.0% | 14.2% |
| 4072878 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.65 | 44.0 | 4.44e-01 | 100.0% | 68.8% |
| 3237442 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 53.0 | 4.88e-01 | 100.0% | 69.0% |
| 4995824 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 45.0 | 4.68e-01 | 100.0% | 79.5% |
| 3625411 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 46.0 | 4.11e-01 | 100.0% | 52.2% |
| 3970015 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.64 | 49.0 | 4.63e-01 | 100.0% | 68.1% |
| 3720023 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 50.0 | 4.60e-01 | 100.0% | 66.0% |
| 4161622 | 1.1.7.70 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II | 0.64 | 48.0 | 4.90e-01 | 96.2% | 82.7% |
| 4634180 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.64 | 48.0 | 4.57e-01 | 100.0% | 68.9% |
| 3974181 | 1.1.5.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF29489 | 0.63 | 47.0 | 4.54e-01 | 100.0% | 70.0% |
| 4042216 | 1.1.7.70 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II | 0.63 | 50.0 | 5.07e-01 | 98.7% | 88.0% |
| 3970225 | 1.1.13.68 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27125 | 0.62 | 44.0 | 4.26e-01 | 98.7% | 65.6% |
| 4318415 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.59 | 44.0 | 4.19e-01 | 100.0% | 66.3% |
| 4244186 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.58 | 47.0 | 4.19e-01 | 100.0% | 61.7% |
| 3949305 | 1.1.13.54 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_L | 0.58 | 50.0 | 4.14e-01 | 100.0% | 65.5% |
| 4552342 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.57 | 46.0 | 4.19e-01 | 100.0% | 63.6% |
| 1883205 | 1.1.13.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N | 0.57 | 43.0 | 3.88e-01 | 100.0% | 58.2% |
| 1309427 | 1.1.5.13 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S6 | 0.55 | 44.0 | 3.13e-01 | 100.0% | 27.4% |
| 3788348 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.55 | 49.0 | 4.32e-01 | 100.0% | 74.8% |
| 4197562 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.53 | 44.0 | 3.17e-01 | 94.9% | 52.7% |
| 3946118 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.53 | 44.0 | 4.50e-01 | 100.0% | 97.3% |
| 4366827 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.53 | 45.0 | 3.28e-01 | 98.7% | 56.6% |
| 4197078 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.52 | 43.0 | 3.46e-01 | 96.2% | 93.5% |
| 4966477 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.52 | 37.0 | 3.51e-01 | 83.3% | 62.1% |
| 4129961 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.52 | 44.0 | 3.24e-01 | 98.7% | 55.7% |
| 3743285 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.52 | 45.0 | 3.27e-01 | 100.0% | 39.6% |
| 4615864 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.52 | 43.0 | 3.40e-01 | 98.7% | 41.7% |
| 4024866 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.52 | 41.0 | 3.03e-01 | 92.3% | 69.6% |
| 4678692 | 5090.2.1.2 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Immune inhibitor A metallopeptidase C-terminal domain › Immune inhibitor A metallopeptidase C-terminal domain › PF30934 | 0.51 | 43.0 | 3.25e-01 | 98.7% | 83.3% |
D2
medium
residues 42-200
Domain cluster:
rep: PPR_Contig_984988_prodigal-single.1__X__X__00292__D1206-1338_1363-1390
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13550.14 best | Phage-tail_3 | 51.4 | 1.70e-13 | 84.3% | 79.1% |
D3
medium
residues 221-284
Domain cluster:
representative