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NC_070623.1__YP_010644241.1__PPK14_gp06__00006

Bact-Vir

NC_070623.1__YP_010644241.1__PPK14_gp06__00006

Identity

Accession:
NC_070623 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Trautnerviridae› Splendidredvirus› Bacillus_phage_vB_BspS_SplendidRed

TaxID: 2591379

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-86
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3doaA03 3.40.970.40 Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › fibrinogen binding protein from staphylococcus aureus domain like 0.67 35.0 4.46e-01 73.8% 97.7%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.64 50.0 4.89e-01 84.5% 96.7%
4e6zA01 3.40.1350.100 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.60 46.0 4.25e-01 82.1% 75.2%
2bh1X00 3.30.300.160 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Type II secretion system, protein E, N-terminal domain 0.57 37.0 3.98e-01 77.4% 80.9%
2e3tB03 3.30.43.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 0.57 35.0 3.87e-01 97.6% 80.3%
3op6A00 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.56 44.0 3.76e-01 86.9% 72.6%
3gr0D01 3.30.70.1780 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 29.0 3.76e-01 81.0% 100.0%
4zohA05 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.52 44.0 3.74e-01 96.4% 70.5%
3hrdB02 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.52 44.0 3.74e-01 97.6% 72.5%
1ffvB03 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.51 43.0 3.58e-01 97.6% 65.1%
2e1qC10 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.51 42.0 3.80e-01 97.6% 69.5%
1rm6A05 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.51 43.0 3.49e-01 97.6% 62.4%
1mjgM05 3.40.1470.10 Alpha Beta › 3-Layer(aba) Sandwich › Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5 › Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5 0.51 43.0 3.77e-01 96.4% 92.3%
3fn5B00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.50 40.0 3.35e-01 90.5% 94.5%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3210904 12.6.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.66 51.0 4.33e-01 82.1% 97.8%
3313016 3397.1.1.2 ↗ a+b complex topology › Tic22 › Tic22 › Tic22 › DUF3110 0.66 53.0 4.69e-01 86.9% 88.3%
3359751 3397.1.1.0 ↗ a+b complex topology › Tic22 › Tic22 › Tic22 0.65 52.0 4.59e-01 86.9% 84.8%
3582540 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.64 49.0 4.65e-01 83.3% 97.1%
5028983 299.1.1.0 ↗ a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain 0.63 50.0 3.89e-01 86.9% 71.8%
3815036 3397.1.1.0 ↗ a+b complex topology › Tic22 › Tic22 › Tic22 0.62 49.0 4.33e-01 86.9% 85.6%
4996322 821.1.1.14 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 0.60 45.0 4.28e-01 88.1% 65.7%
1178361 3397.1.1.0 ↗ a+b complex topology › Tic22 › Tic22 › Tic22 0.60 45.0 4.44e-01 82.1% 88.2%
5083953 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.59 43.0 4.44e-01 78.6% 98.8%
4945348 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.58 52.0 4.56e-01 96.4% 91.7%
4436337 7510.1.1.5 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › PdxA 0.56 42.0 3.63e-01 82.1% 96.4%
3741673 210.1.4.1 ↗ a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase › Asparaginase_2 0.56 39.0 2.71e-01 76.2% 49.9%
4405873 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.55 31.0 2.81e-01 96.4% 37.4%
5043432 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.55 41.0 4.02e-01 79.8% 98.9%
3348136 304.110.1.4 ↗ a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › UPF0176_N 0.55 44.0 4.01e-01 89.3% 85.2%
3611020 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 35.0 2.75e-01 71.4% 79.0%
4982671 231.1.1.2 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_2 0.51 43.0 2.90e-01 96.4% 26.0%
2698882 316.1.1.27 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.51 38.0 3.27e-01 79.8% 53.9%
4984000 231.1.1.1 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_1 0.51 44.0 2.76e-01 100.0% 61.0%