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NC_070623.1__YP_010644283.1__PPK14_gp48__00048

Bact-Vir

NC_070623.1__YP_010644283.1__PPK14_gp48__00048

Identity

Accession:
NC_070623 ↗
Kingdom:
phage

Quality

78.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Trautnerviridae› Splendidredvirus› Bacillus_phage_vB_BspS_SplendidRed

TaxID: 2591379

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-100
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r19A00 2.60.450.10 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › Lipopolysaccharide (LPS) transport protein A like domain 0.66 48.0 4.01e-01 93.5% 43.7%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.61 54.0 4.43e-01 100.0% 73.2%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.60 54.0 4.42e-01 100.0% 76.6%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.58 48.0 3.95e-01 90.9% 70.0%
2uv8A06 3.30.70.2490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 32.0 3.38e-01 79.2% 58.2%
2g0qA01 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.57 38.0 3.36e-01 81.8% 46.1%
2q1fA03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 41.0 2.92e-01 83.1% 90.6%
3a2bA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 40.0 3.46e-01 85.7% 71.2%
3ly1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 41.0 3.50e-01 87.0% 81.4%
1b1eA00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.51 38.0 3.44e-01 85.7% 95.1%
3p1tA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 40.0 3.52e-01 88.3% 91.0%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 40.0 2.74e-01 89.6% 98.3%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 41.0 3.54e-01 94.8% 65.2%
3ffhA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 37.0 3.21e-01 81.8% 56.1%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028473 331.23.1.7 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.78 48.0 4.88e-01 90.9% 64.0%
3510095 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.66 48.0 4.29e-01 85.7% 56.2%
3637624 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.65 48.0 4.13e-01 85.7% 50.0%
4023469 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.65 51.0 4.14e-01 88.3% 46.4%
3788566 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.64 49.0 3.92e-01 88.3% 42.0%
3738591 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.64 50.0 4.04e-01 85.7% 45.7%
3973035 2011.1.1.0 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.64 55.0 3.49e-01 97.4% 70.7%
3783591 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.63 49.0 4.42e-01 83.1% 71.4%
3254677 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.63 46.0 4.10e-01 81.8% 54.5%
3830573 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.59 49.0 4.29e-01 90.9% 71.1%
3744637 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.58 47.0 3.61e-01 87.0% 48.8%
3739582 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 40.0 4.48e-01 94.8% 98.3%
3602319 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.56 38.0 3.40e-01 81.8% 50.5%
3237828 331.9.1.9 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 0.56 50.0 4.47e-01 100.0% 80.9%
3405615 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 42.0 4.00e-01 84.4% 88.3%
4045888 372.1.1.1 ↗ a+b complex topology › RNase A-like › RNase A-like › RNase A-like › RnaseA 0.52 40.0 3.55e-01 85.7% 99.2%
3698096 219.1.1.115 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.52 44.0 3.44e-01 98.7% 72.2%
1678131 3016.1.1.1 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.52 39.0 3.72e-01 81.8% 75.6%
3603293 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.51 43.0 3.78e-01 94.8% 83.5%
3472858 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.50 29.0 3.01e-01 88.3% 60.3%