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NC_070625.1__YP_010644444.1__PPK16_gp43__00043

Bact-Vir

NC_070625.1__YP_010644444.1__PPK16_gp43__00043

Identity

Accession:
NC_070625 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Trautnerviridae› Rivavirus› Bacillus_phage_049ML001

TaxID: 2601660

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-71
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.88 62.0 6.34e-01 72.6% 88.1%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.85 58.0 5.74e-01 71.0% 78.5%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 57.0 5.47e-01 71.0% 69.0%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 58.0 5.85e-01 74.2% 79.4%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 57.0 5.71e-01 75.8% 79.7%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.79 63.0 4.51e-01 85.5% 72.5%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 57.0 5.19e-01 75.8% 77.2%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 70.0 5.76e-01 100.0% 86.1%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.76 52.0 3.56e-01 71.0% 29.5%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 51.0 4.84e-01 71.0% 88.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 59.0 5.53e-01 83.9% 71.2%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 67.0 5.52e-01 100.0% 89.8%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.73 61.0 4.62e-01 88.7% 83.5%
8aasC01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 50.0 4.27e-01 74.2% 72.5%
2daqA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 61.0 5.00e-01 95.2% 80.9%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 59.0 5.16e-01 91.9% 76.1%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.25e-01 83.9% 68.2%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.62 48.0 4.39e-01 83.9% 79.5%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 47.0 3.74e-01 95.2% 42.4%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.59 44.0 4.19e-01 79.0% 78.9%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 48.0 4.32e-01 88.7% 78.6%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.58 47.0 4.47e-01 88.7% 98.6%
4j31A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 39.0 2.47e-01 71.0% 42.3%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.58 47.0 4.06e-01 93.5% 83.5%
1okeB02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.57 43.0 4.04e-01 80.6% 79.2%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 46.0 4.31e-01 88.7% 86.8%
2p2sA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 37.0 2.67e-01 71.0% 61.2%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 37.0 2.51e-01 71.0% 82.9%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 41.0 2.52e-01 83.9% 97.5%
2ywlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 41.0 3.00e-01 85.5% 61.6%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.57e-01 95.2% 64.5%
3d1cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 39.0 2.69e-01 85.5% 59.3%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.91 63.0 5.98e-01 71.0% 68.6%
4064354 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.83 58.0 5.92e-01 72.6% 75.0%
3979903 4.1.1.465 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_6, SH3_7 0.81 61.0 3.88e-01 79.0% 33.1%
3798859 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.80 69.0 5.99e-01 91.9% 66.7%
3387889 4.1.1.451 ↗ beta barrels › SH3 › SH3 › SH3 › N_NLPC_P60, SH3_6, SH3_7 0.80 58.0 3.87e-01 77.4% 37.9%
3267416 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.79 57.0 5.22e-01 75.8% 80.0%
3715776 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 70.0 6.87e-01 100.0% 90.8%
3881119 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 65.0 5.87e-01 87.1% 70.0%
3917568 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 69.0 5.48e-01 93.5% 52.2%
3924213 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 69.0 5.85e-01 93.5% 62.1%
3389175 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 69.0 5.97e-01 93.5% 65.6%
3997949 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 69.0 5.98e-01 93.5% 66.7%
3840677 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 68.0 5.64e-01 91.9% 59.0%
3498280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 65.0 5.03e-01 90.3% 60.0%
3195050 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 67.0 5.70e-01 91.9% 65.3%
3622052 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 68.0 6.03e-01 93.5% 71.8%
3476478 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 71.0 6.09e-01 100.0% 93.7%
4147056 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 67.0 5.55e-01 91.9% 57.0%
4610859 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 53.0 5.29e-01 74.2% 89.2%
3628870 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 69.0 5.55e-01 98.4% 55.5%
3214149 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.75 52.0 5.15e-01 72.6% 95.4%
3569639 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 59.0 5.36e-01 83.9% 78.8%
3883895 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.74 56.0 4.72e-01 80.6% 80.0%
3547084 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 66.0 5.79e-01 98.4% 67.8%
3170251 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.73 64.0 4.88e-01 96.8% 54.3%
3366511 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 57.0 5.62e-01 85.5% 100.0%
4020558 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 51.0 5.09e-01 75.8% 95.4%
4957350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 50.0 4.99e-01 75.8% 81.5%
3525376 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 55.0 5.42e-01 83.9% 93.8%
3914833 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 55.0 5.27e-01 83.9% 91.4%
3829807 4.18.1.1 ↗ beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.69 61.0 4.75e-01 100.0% 63.7%
3539094 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.07e-01 91.9% 95.0%
4505786 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.65 44.0 3.48e-01 71.0% 49.6%
5027286 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 50.0 4.49e-01 83.9% 76.5%
3839852 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.63 49.0 4.65e-01 83.9% 92.0%
4122525 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 52.0 4.89e-01 90.3% 80.0%
3945707 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.63 43.0 4.87e-01 80.6% 100.0%
3979986 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 47.0 4.47e-01 83.9% 92.0%
5030535 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.61 51.0 4.75e-01 90.3% 96.0%
4265586 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.60 45.0 3.49e-01 79.0% 72.0%
5049033 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.59 48.0 4.51e-01 88.7% 92.0%
3235763 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.58 44.0 4.12e-01 83.9% 77.5%
3957580 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 43.0 3.21e-01 83.9% 79.4%