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NC_070625.1__YP_010644449.1__PPK16_gp48__00048

Bact-Vir

NC_070625.1__YP_010644449.1__PPK16_gp48__00048

Identity

Accession:
NC_070625 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Trautnerviridae› Rivavirus› Bacillus_phage_049ML001

TaxID: 2601660

Cluster

View cluster (15 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-91
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 42.0 4.68e-01 96.5% 74.2%
7y8sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 41.0 4.02e-01 100.0% 54.7%
4ag4A02 2.60.120.1190 Mainly Beta › Sandwich › Jelly Rolls › 0.67 43.0 3.34e-01 100.0% 30.4%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.66 37.0 4.57e-01 96.5% 92.0%
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 37.0 3.62e-01 100.0% 52.7%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 41.0 4.22e-01 95.3% 68.7%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.61 33.0 3.63e-01 78.8% 64.3%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 4.61e-01 96.5% 92.4%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.32e-01 97.6% 77.9%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.46e-01 95.3% 89.7%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.57 35.0 3.57e-01 77.6% 63.0%
5dcaA08 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 37.0 3.48e-01 100.0% 51.8%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.57 38.0 3.43e-01 100.0% 48.4%
3b2dC00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 42.0 3.57e-01 100.0% 49.6%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.55 34.0 3.18e-01 100.0% 48.1%
1u5tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 28.0 3.07e-01 77.6% 57.7%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 33.0 3.40e-01 78.8% 62.7%
4y66F01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 29.0 3.23e-01 76.5% 66.7%
3rwlA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 45.0 2.97e-01 98.8% 38.6%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 37.0 4.13e-01 95.3% 97.0%
7sqxA02 3.30.70.2150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 46.0 4.45e-01 98.8% 87.8%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 30.0 3.35e-01 90.6% 75.0%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.51 42.0 4.23e-01 100.0% 94.0%
6v93E01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.51 43.0 3.33e-01 95.3% 66.2%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.50 34.0 3.31e-01 96.5% 62.4%
1cptA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.50 38.0 2.58e-01 85.9% 73.8%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4661020 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.74 42.0 3.32e-01 100.0% 27.7%
5002601 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.71 40.0 4.70e-01 91.8% 79.7%
3591570 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.71 41.0 3.73e-01 97.6% 43.6%
4139090 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.70 42.0 5.04e-01 96.5% 92.7%
3986774 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.70 44.0 4.16e-01 100.0% 54.0%
5029405 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.69 41.0 5.00e-01 96.5% 92.7%
4540843 4.1.1.434 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2642 0.69 40.0 4.51e-01 95.3% 75.4%
5027750 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 43.0 5.05e-01 98.8% 98.2%
4432348 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 41.0 4.51e-01 97.6% 75.0%
3590658 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 51.0 5.55e-01 100.0% 98.6%
4214438 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 42.0 4.70e-01 96.5% 84.6%
4401977 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 37.0 3.71e-01 100.0% 51.1%
3923859 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 41.0 3.92e-01 100.0% 53.0%
4554867 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 41.0 4.61e-01 95.3% 83.1%
3190394 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 44.0 4.02e-01 100.0% 51.8%
4231372 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.65 50.0 5.44e-01 96.5% 100.0%
4248855 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 42.0 4.45e-01 97.6% 75.7%
4514731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 38.0 3.88e-01 95.3% 58.8%
5042719 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 46.0 4.16e-01 100.0% 55.7%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.63 49.0 5.29e-01 95.3% 100.0%
4252954 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 40.0 4.36e-01 96.5% 78.6%
4158712 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 41.0 4.44e-01 97.6% 80.0%
3954254 4.1.1.387 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c 0.63 41.0 4.59e-01 96.5% 87.7%
4448678 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.62 50.0 5.27e-01 97.6% 98.7%
4030677 1116.1.1.0 ↗ a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.61 42.0 3.46e-01 100.0% 39.3%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.61 41.0 4.40e-01 97.6% 80.0%
3580968 10.40.1.1 ↗ beta sandwiches › jelly-roll › PHR domain › PHR domain › PHR 0.60 40.0 3.27e-01 100.0% 35.2%
4020851 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 36.0 3.13e-01 84.7% 40.0%
4988619 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.59 33.0 3.58e-01 80.0% 65.7%
3939640 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.58 40.0 4.00e-01 83.5% 68.9%
5083095 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 43.0 3.50e-01 100.0% 42.1%
3605971 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 40.0 3.71e-01 97.6% 59.1%
3740938 223.2.1.34 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 0.54 41.0 3.36e-01 82.4% 93.9%
3224229 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.53 48.0 2.91e-01 100.0% 22.5%
3797921 11.1.1.905 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ILCR1 0.53 40.0 3.38e-01 100.0% 47.6%
3800063 11.1.1.905 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ILCR1 0.53 40.0 3.19e-01 100.0% 39.4%
3630462 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 39.0 3.32e-01 77.6% 91.4%
5042330 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.53 37.0 4.03e-01 91.8% 91.4%
3246217 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 44.0 3.81e-01 95.3% 86.7%
3695839 101.1.2.160 ↗ alpha arrays › HTH › HTH › winged helix domain › BLACT_WH 0.51 34.0 3.66e-01 90.6% 79.7%
3230219 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.51 36.0 3.64e-01 72.9% 80.0%
3722124 101.1.2.165 ↗ alpha arrays › HTH › HTH › winged helix domain › ORC_WH_C 0.51 37.0 3.17e-01 78.8% 48.5%
3395053 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.51 28.0 3.05e-01 78.8% 62.9%
3712071 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.50 40.0 2.82e-01 88.2% 86.4%