←Back to structures

NC_070727.1__YP_010648363.1__PP279_gp39__00039

Bact-Vir

NC_070727.1__YP_010648363.1__PP279_gp39__00039

Identity

Accession:
NC_070727 ↗
Kingdom:
phage

Quality

85.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zhangqianvirus› Staphylococcus_virus_IME1354_01

TaxID: 3070820

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-22_54-131
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.76 49.0 5.06e-01 93.0% 69.1%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.74 32.0 4.04e-01 70.0% 65.6%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.67 54.0 4.72e-01 98.0% 59.2%
1cm5A00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.61 53.0 3.16e-01 100.0% 12.6%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 45.0 3.48e-01 87.0% 96.2%
1k92A02 3.90.1260.10 Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 0.56 49.0 3.84e-01 97.0% 89.8%
7e4gA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 40.0 3.26e-01 79.0% 53.8%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.54 41.0 3.83e-01 81.0% 87.2%
3ggyA00 1.20.1260.60 Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 0.53 42.0 3.46e-01 86.0% 72.6%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.52 36.0 3.49e-01 72.0% 82.8%
3d2eA06 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 34.0 3.30e-01 93.0% 58.4%
5unhA02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 43.0 3.11e-01 89.0% 64.7%
4mudC00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 44.0 3.45e-01 96.0% 51.8%
4jkzA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 37.0 3.12e-01 78.0% 86.6%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4034495 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.96 93.0 9.12e-01 100.0% 96.2%
4458444 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 57.0 5.89e-01 77.0% 84.2%
4372550 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.75 51.0 5.41e-01 82.0% 77.8%
3589001 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 65.0 6.37e-01 98.0% 88.9%
3971395 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.74 53.0 6.02e-01 74.0% 98.7%
4146353 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.73 52.0 5.76e-01 76.0% 92.5%
3786128 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 51.0 5.62e-01 88.0% 90.0%
3163616 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.72 51.0 5.28e-01 100.0% 77.7%
4214308 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.71 53.0 5.68e-01 78.0% 97.6%
4336182 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 53.0 5.58e-01 97.0% 94.4%
4034281 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 59.0 5.78e-01 98.0% 90.9%
3270967 633.6.1.2 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX 0.61 47.0 4.17e-01 80.0% 80.0%
4028858 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.58 46.0 4.29e-01 85.0% 85.5%
3595100 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.57 37.0 3.77e-01 71.0% 65.0%
3734796 5059.1.1.8 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Mg_trans_NIPA 0.56 44.0 4.20e-01 85.0% 90.0%
3972078 5059.1.1.13 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › DMT_6 0.54 39.0 3.77e-01 77.0% 95.6%
4417622 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.53 47.0 3.67e-01 97.0% 88.8%
3449442 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.53 31.0 3.10e-01 98.0% 54.3%
3636971 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.52 41.0 3.85e-01 97.0% 69.2%
3649574 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.52 39.0 3.87e-01 81.0% 89.0%
3598296 1075.4.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold 0.51 45.0 3.23e-01 95.0% 60.4%
4018322 611.7.1.0 ↗ alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain 0.50 38.0 3.40e-01 81.0% 95.9%