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NC_070762.1__YP_010648712.1__PP302_gp003__00003

Bact-Vir

NC_070762.1__YP_010648712.1__PP302_gp003__00003

Identity

Accession:
NC_070762 ↗
Kingdom:
phage

Quality

70.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sixamavirus› Gordonia_phage_Sixama

TaxID: 2653271

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-86
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gniA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.62 36.0 3.57e-01 98.7% 52.3%
1lkxC03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.56 42.0 3.84e-01 81.0% 88.8%
2kloA00 1.10.10.1420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain 0.53 40.0 3.43e-01 83.5% 64.5%
6umqA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.52 42.0 3.73e-01 88.6% 72.2%
3jysA01 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 41.0 2.92e-01 89.9% 30.5%
1inpA02 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.51 40.0 3.09e-01 98.7% 36.4%
6ajpA00 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.51 38.0 2.91e-01 83.5% 59.2%
2kqrA01 3.30.1910.20 Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain 0.50 37.0 3.87e-01 79.7% 100.0%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3679534 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.63 48.0 2.96e-01 81.0% 71.0%
3260131 109.4.1.414 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MMS19_N 0.61 46.0 3.11e-01 81.0% 51.9%
3215753 3226.1.1.1 ↗ alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Xan_ur_permease 0.60 43.0 2.61e-01 98.7% 11.9%
3333193 102.3.1.1 ↗ alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha 0.60 39.0 3.56e-01 88.6% 47.3%
4629037 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 43.0 3.47e-01 77.2% 66.7%
1207585 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.60 38.0 3.80e-01 94.9% 63.0%
3297933 328.7.1.2 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › PF29032 0.59 43.0 3.77e-01 77.2% 82.6%
3471267 304.48.1.3 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.58 43.0 2.62e-01 98.7% 12.2%
3860270 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.57 43.0 3.02e-01 83.5% 78.2%
2630038 633.6.1.1 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 0.55 49.0 3.74e-01 98.7% 80.1%
3204533 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.55 26.0 2.66e-01 100.0% 41.3%
3517895 5054.1.1.59 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 0.55 42.0 2.77e-01 82.3% 40.3%
5075421 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.55 38.0 2.72e-01 72.2% 95.0%
4985682 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.54 48.0 4.04e-01 100.0% 72.6%
3889407 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.54 41.0 2.83e-01 82.3% 71.1%
3178096 3914.1.1.10 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › STIMATE 0.53 43.0 3.24e-01 91.1% 52.9%
3969345 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 40.0 2.98e-01 84.8% 58.6%
3616294 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 39.0 3.31e-01 79.7% 55.2%
4672256 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.51 37.0 3.42e-01 81.0% 79.1%
3990521 5050.1.1.31 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › SLC52_ribofla_tr 0.51 43.0 3.46e-01 100.0% 73.1%
3592688 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.51 46.0 3.44e-01 98.7% 83.8%
3937938 109.4.1.47 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N,Xpo1,CRM1_C,CRM1_repeat,CRM1_repeat_2,CRM1_repeat_3 0.51 38.0 2.14e-01 79.7% 16.3%
5025448 1075.1.1.3 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 0.50 37.0 2.64e-01 81.0% 63.9%
5046461 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.50 38.0 2.92e-01 83.5% 41.5%
3392569 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.50 38.0 3.25e-01 84.8% 50.4%
4382858 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 36.0 2.30e-01 79.7% 16.3%