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NC_070762.1__YP_010648743.1__PP302_gp034__00034

Bact-Vir

NC_070762.1__YP_010648743.1__PP302_gp034__00034

Identity

Accession:
NC_070762 ↗
Kingdom:
phage

Quality

65.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 58-101
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.76 47.0 5.18e-01 97.7% 81.8%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.74 41.0 3.78e-01 100.0% 40.4%
2ymsB00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 46.0 3.84e-01 100.0% 37.8%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.70 45.0 4.18e-01 95.5% 50.9%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 44.0 3.86e-01 79.5% 46.0%
2yshA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.68 42.0 4.55e-01 93.2% 81.8%
5cq2A02 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.67 42.0 4.32e-01 97.7% 65.1%
1eg3A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.67 44.0 4.64e-01 100.0% 78.9%
2kxqA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.66 41.0 4.45e-01 97.7% 90.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.66 50.0 4.73e-01 100.0% 69.2%
2atcB02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.64 55.0 5.27e-01 100.0% 84.6%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.63 46.0 3.50e-01 100.0% 32.7%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 3.99e-01 100.0% 50.7%
4b9dB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 43.0 3.40e-01 88.6% 34.4%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 49.0 4.82e-01 100.0% 85.1%
5bxrA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 51.0 3.66e-01 100.0% 57.4%
3kflA02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.60 43.0 3.29e-01 81.8% 33.9%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 39.0 3.51e-01 72.7% 52.2%
4xr7E01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.58 36.0 2.21e-01 100.0% 9.1%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 49.0 4.09e-01 100.0% 58.2%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 47.0 4.37e-01 100.0% 78.0%
6k5gA01 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.56 41.0 2.59e-01 93.2% 13.7%
1vwxg01 6.20.370.70 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.56 36.0 3.89e-01 75.0% 81.1%
3nyqA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.55 45.0 2.67e-01 97.7% 78.1%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 46.0 4.17e-01 100.0% 71.9%
2wyhB06 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.54 43.0 2.68e-01 93.2% 62.5%
3cw9A01 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 40.0 2.73e-01 84.1% 66.7%
3odtA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 40.0 2.57e-01 95.5% 36.8%
4whiA00 2.40.128.600 Mainly Beta › Beta Barrel › Lipocalin › 0.52 40.0 3.19e-01 88.6% 58.8%
1a2fA02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.52 40.0 3.00e-01 88.6% 67.8%
3ednA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 42.0 3.17e-01 100.0% 70.9%
2mdiA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.51 42.0 3.98e-01 100.0% 75.0%
3vkgA07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.29e-01 86.4% 71.6%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 33.0 2.98e-01 75.0% 42.4%
3wv4A00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.51 41.0 2.46e-01 97.7% 76.5%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4999716 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.89 60.0 6.66e-01 70.5% 91.4%
3344139 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.82 50.0 4.60e-01 97.7% 49.1%
3404953 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.81 47.0 4.96e-01 95.5% 65.0%
3199196 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.79 57.0 6.12e-01 77.3% 100.0%
3380380 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 54.0 5.81e-01 72.7% 97.1%
3992209 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.78 47.0 4.72e-01 97.7% 60.0%
3584345 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.76 56.0 3.99e-01 81.8% 66.7%
4025420 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.75 43.0 2.69e-01 95.5% 10.9%
3701625 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.73 53.0 5.35e-01 95.5% 77.8%
3228859 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.73 46.0 4.95e-01 100.0% 80.0%
3230560 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 51.0 5.43e-01 75.0% 97.1%
3572853 386.1.1.298 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_2nd_ZNF462 0.73 44.0 4.43e-01 97.7% 57.8%
3517343 386.1.1.307 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29712 0.72 46.0 3.15e-01 93.2% 19.3%
3586791 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.72 43.0 4.77e-01 97.7% 77.1%
3702861 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.71 53.0 4.95e-01 90.9% 65.5%
4433750 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.71 45.0 2.60e-01 100.0% 6.9%
4026161 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.71 59.0 4.35e-01 97.7% 77.6%
2426645 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.70 49.0 4.66e-01 95.5% 61.8%
3994420 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.70 45.0 4.85e-01 100.0% 82.9%
4421229 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.69 56.0 4.35e-01 95.5% 99.0%
3258369 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 48.0 5.05e-01 97.7% 89.5%
3583479 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 42.0 4.37e-01 97.7% 65.0%
4110072 375.1.4.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C 0.69 60.0 5.59e-01 100.0% 85.5%
4944150 377.2.1.0 few secondary structure elements › Glucocorticoid receptor-like › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › C-terminal, Zn-finger domain of MutM-like DNA repair proteins 0.68 50.0 5.35e-01 93.2% 100.0%
3563758 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.67 45.0 3.35e-01 100.0% 28.6%
3593031 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 51.0 3.38e-01 84.1% 35.9%
4934260 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 50.0 4.76e-01 88.6% 68.5%
3545741 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.67 42.0 4.27e-01 100.0% 62.2%
3263564 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.67 43.0 4.61e-01 97.7% 82.9%
5024226 375.1.1.83 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.67 46.0 4.62e-01 93.2% 71.1%
3259112 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.67 42.0 4.55e-01 97.7% 80.0%
3413714 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.66 53.0 3.49e-01 97.7% 47.3%
3473634 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.66 42.0 4.47e-01 100.0% 80.0%
3375181 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.66 52.0 3.74e-01 95.5% 71.0%
3925225 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 46.0 4.80e-01 95.5% 97.1%
3451552 375.1.4.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 0.65 54.0 5.10e-01 97.7% 83.3%
4488182 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 48.0 4.99e-01 97.7% 95.0%
4946465 375.1.4.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 0.65 56.0 5.43e-01 97.7% 88.0%
3748902 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.65 41.0 3.62e-01 100.0% 40.0%
3920690 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.64 43.0 4.21e-01 100.0% 62.0%
5037381 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.63 48.0 4.64e-01 97.7% 74.0%
3708672 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.63 39.0 3.19e-01 97.7% 31.8%
1614032 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.63 41.0 4.35e-01 100.0% 81.1%
4491893 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.62 49.0 3.94e-01 97.7% 99.0%
4915813 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.62 50.0 3.26e-01 100.0% 27.8%
4932368 2005.1.1.17 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.62 46.0 2.88e-01 84.1% 29.8%
3040109 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.61 42.0 4.22e-01 93.2% 72.3%
3689298 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.61 41.0 3.63e-01 70.5% 84.6%
4163789 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.60 47.0 3.79e-01 97.7% 99.0%
3587270 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 46.0 3.45e-01 88.6% 75.7%
3596701 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.58 37.0 3.14e-01 97.7% 36.3%
3907533 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.58 40.0 4.08e-01 95.5% 82.5%
3501387 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.58 46.0 2.78e-01 100.0% 13.4%
5026377 375.1.1.9 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.56 42.0 3.79e-01 100.0% 93.8%
136515 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.56 38.0 3.41e-01 72.7% 51.5%
3833973 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.56 45.0 4.00e-01 93.2% 73.8%
4012190 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 45.0 2.67e-01 90.9% 12.4%
3512778 375.1.1.9 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.55 43.0 3.51e-01 95.5% 81.1%
3599410 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.54 40.0 2.45e-01 86.4% 16.3%
4022249 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.54 44.0 2.62e-01 97.7% 18.6%
3169647 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 41.0 2.55e-01 95.5% 31.0%
3469800 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 45.0 3.82e-01 100.0% 57.5%
3186071 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 35.0 3.79e-01 100.0% 96.7%
4018269 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.53 45.0 2.89e-01 95.5% 24.6%
3285549 132.1.1.1 alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.52 41.0 2.82e-01 97.7% 82.5%
3998685 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.52 40.0 3.34e-01 88.6% 96.5%
3192627 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.52 43.0 2.81e-01 93.2% 26.7%
3812094 5.1.4.223 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd 0.52 40.0 2.47e-01 100.0% 20.8%
3995338 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 41.0 2.98e-01 100.0% 52.3%
3975056 241.13.1.0 a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA 0.51 38.0 2.78e-01 81.8% 63.8%
3214083 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 40.0 2.94e-01 100.0% 52.3%
3936845 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 39.0 2.89e-01 100.0% 51.0%
3272079 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.51 43.0 2.59e-01 97.7% 85.5%
2579238 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.51 36.0 2.63e-01 84.1% 65.2%