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NC_070763.1__YP_010648926.1__PP303_gp046__00046

Bact-Vir

NC_070763.1__YP_010648926.1__PP303_gp046__00046

Identity

Accession:
NC_070763 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-87
PDB
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.71 49.0 5.23e-01 93.9% 84.1%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.67 44.0 4.85e-01 97.6% 86.2%
2jpiA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.66 50.0 4.77e-01 92.7% 68.8%
1yprA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.65 46.0 4.03e-01 74.4% 75.2%
4o9dA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 44.0 2.84e-01 72.0% 20.2%
3loyA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 45.0 4.19e-01 72.0% 87.1%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.64 49.0 4.42e-01 82.9% 87.8%
1jqpA01 2.40.128.80 Mainly Beta › Beta Barrel › Lipocalin › Cathepsin C, exclusion domain 0.63 54.0 4.89e-01 93.9% 100.0%
2g7jA00 3.90.1150.40 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Protein of unknown function DUF2002 0.63 53.0 4.83e-01 93.9% 97.3%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 49.0 3.97e-01 85.4% 44.8%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.62 55.0 5.38e-01 96.3% 88.8%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.62 55.0 5.08e-01 96.3% 78.4%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.62 52.0 3.53e-01 92.7% 86.5%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 48.0 4.21e-01 86.6% 98.4%
3fcdB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 46.0 4.00e-01 79.3% 78.2%
2o34A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.60 45.0 3.20e-01 79.3% 63.9%
1yloA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.59 50.0 3.54e-01 95.1% 86.4%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 46.0 4.47e-01 84.1% 77.8%
1idpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 40.0 3.35e-01 72.0% 95.9%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.58 44.0 2.90e-01 80.5% 30.7%
1ecsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 50.0 4.35e-01 92.7% 87.5%
1uu1B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 48.0 4.07e-01 96.3% 57.3%
3imoC00 3.30.920.70 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.57 50.0 4.61e-01 100.0% 86.0%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.56 43.0 4.11e-01 91.5% 70.5%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.56 42.0 2.78e-01 80.5% 30.0%
1nkiA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 49.0 4.11e-01 93.9% 74.6%
3cq4A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 48.0 4.08e-01 96.3% 59.4%
1qtoA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 47.0 4.16e-01 92.7% 86.9%
3ct8A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 49.0 4.14e-01 96.3% 85.0%
4ua3A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 45.0 3.49e-01 90.2% 79.0%
4r5zA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 46.0 4.00e-01 96.3% 59.5%
3hdoA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 49.0 4.13e-01 96.3% 61.5%
3p1tA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 47.0 4.13e-01 96.3% 63.9%
3h5kA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.54 42.0 3.38e-01 86.6% 92.7%
3getA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 47.0 4.55e-01 96.3% 87.2%
3cxbA01 3.30.2440.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein SifA fold › Secreted effector protein SifA 0.54 41.0 3.68e-01 82.9% 60.9%
3g5oC00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.53 36.0 3.61e-01 70.7% 98.9%
3uh9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 45.0 3.86e-01 92.7% 78.2%
3oxhA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 40.0 3.49e-01 84.1% 72.3%
3a7rA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 45.0 3.23e-01 97.6% 41.9%
3a2bA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 45.0 3.83e-01 96.3% 66.7%
1llnA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.52 44.0 3.49e-01 96.3% 94.3%
5vnxA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 44.0 3.76e-01 96.3% 64.4%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 3.99e-01 92.7% 100.0%
3ly1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 45.0 3.86e-01 97.6% 64.3%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 41.0 2.75e-01 93.9% 89.7%
3fryA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 33.0 3.62e-01 73.2% 84.4%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.51 40.0 3.44e-01 89.0% 95.7%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 44.0 3.55e-01 96.3% 55.3%
3ikwA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.04e-01 100.0% 89.8%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3934099 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.73 64.0 6.26e-01 95.1% 90.0%
5048170 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.72 54.0 5.50e-01 92.7% 81.2%
3511972 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.71 53.0 4.99e-01 79.3% 93.0%
3617987 4099.1.1.28 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29108 0.69 59.0 5.90e-01 93.9% 92.9%
5067782 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.69 50.0 5.34e-01 93.9% 88.6%
4938623 881.1.1.45 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF26686 0.69 48.0 3.87e-01 73.2% 39.2%
4982613 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.68 50.0 5.54e-01 95.1% 98.5%
5028032 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.68 51.0 5.09e-01 95.1% 76.5%
3574513 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.67 48.0 3.59e-01 75.6% 61.0%
4993386 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.66 48.0 4.62e-01 93.9% 66.3%
3242625 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.66 56.0 5.02e-01 96.3% 68.2%
3268245 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.66 56.0 5.32e-01 97.6% 91.0%
5041453 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.66 49.0 4.89e-01 95.1% 76.5%
5061708 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.65 49.0 4.92e-01 95.1% 78.3%
4988847 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 46.0 4.78e-01 74.4% 97.3%
3269736 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.65 53.0 5.19e-01 96.3% 81.1%
3307575 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.65 53.0 4.98e-01 95.1% 72.0%
4609138 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.65 52.0 4.25e-01 86.6% 66.0%
4957722 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.64 46.0 3.87e-01 74.4% 51.4%
3955307 881.1.1.8 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C 0.64 45.0 3.60e-01 75.6% 43.1%
3470353 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.64 46.0 3.96e-01 75.6% 73.4%
4968280 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.64 51.0 4.95e-01 93.9% 77.8%
None 0.64 43.0 2.92e-01 70.7% 26.0%
3710689 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.63 53.0 5.00e-01 95.1% 75.0%
3745132 9.8.1.1 beta barrels › Lipocalins/Streptavidin › Dipeptidyl peptidase I (cathepsin C), exclusion domain › Dipeptidyl peptidase I (cathepsin C), exclusion domain › CathepsinC_exc 0.63 54.0 4.66e-01 93.9% 86.9%
4983181 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 55.0 4.84e-01 95.1% 88.3%
6638 241.7.1.2 a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › DUF2002 0.63 53.0 4.83e-01 93.9% 97.3%
185624 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.63 55.0 5.52e-01 97.6% 100.0%
3516806 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.62 54.0 3.69e-01 96.3% 27.9%
3956060 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.61 49.0 4.04e-01 89.0% 53.2%
4679871 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.61 45.0 4.59e-01 87.8% 80.0%
3306543 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.60 42.0 4.48e-01 92.7% 85.7%
4010972 3080.1.1.1 a+b complex topology › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins › NPP1 0.60 54.0 3.96e-01 100.0% 76.6%
2552758 9.1.1.24 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.60 49.0 4.13e-01 89.0% 94.2%
None 0.59 52.0 2.86e-01 100.0% 36.9%
4998670 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.59 48.0 4.72e-01 98.8% 83.3%
3237193 3735.1.1.14 beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell 0.59 53.0 2.97e-01 98.8% 53.8%
3578119 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.59 52.0 3.97e-01 97.6% 86.5%
3744012 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.59 43.0 2.82e-01 78.0% 36.7%
3647550 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.58 50.0 5.00e-01 92.7% 96.5%
3818511 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.58 49.0 4.27e-01 95.1% 72.3%
5052953 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.57 43.0 3.08e-01 80.5% 95.5%
3290463 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 47.0 4.02e-01 90.2% 91.9%
5014290 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.57 46.0 3.91e-01 86.6% 71.1%
3174442 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 42.0 2.95e-01 78.0% 49.2%
4987556 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.56 50.0 4.91e-01 97.6% 87.8%
3228083 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.56 38.0 2.77e-01 78.0% 22.7%
3292710 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.55 43.0 3.39e-01 86.6% 83.2%
5080744 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 48.0 4.03e-01 100.0% 80.0%
6353 331.11.1.1 a+b two layers › TBP-like › Rbstp2229 protein › Rbstp2229 protein › DUF1885 0.54 37.0 3.30e-01 70.7% 64.5%
4460735 3264.1.1.0 0.54 43.0 3.58e-01 93.9% 47.1%
3576228 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.54 43.0 4.19e-01 87.8% 80.4%
3737176 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.53 41.0 4.11e-01 85.4% 85.9%
3230371 3180.1.1.0 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.53 39.0 3.58e-01 79.3% 62.7%
4007136 3016.1.1.1 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.53 46.0 4.21e-01 96.3% 81.5%
3685360 9.14.1.1 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.52 45.0 3.95e-01 98.8% 86.9%
3962507 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 44.0 4.41e-01 96.3% 91.8%
3289293 3016.1.1.1 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.52 45.0 3.91e-01 96.3% 68.8%
3236186 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.52 41.0 3.99e-01 90.2% 90.5%
3283507 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.51 40.0 3.99e-01 90.2% 88.9%