←Back to structures
NC_070763.1__YP_010648931.1__PP303_gp051__00051
Bact-VirNC_070763.1__YP_010648931.1__PP303_gp051__00051
Identity
- Accession:
- NC_070763 ↗
- Kingdom:
- phage
Quality
78.9
mean pLDDT
Taxonomy
TaxID: 2571247
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-147
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6kf9G01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 22.0 | 2.74e-01 | 94.3% | 58.5% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4260211 | 4967.1.1.6 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 | 0.58 | 34.0 | 3.51e-01 | 95.7% | 61.2% |
| 5000456 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.51 | 33.0 | 3.61e-01 | 71.4% | 78.3% |
D2
high
residues 157-241
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gmfA02 | 1.10.40.110 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › | 0.55 | 42.0 | 4.03e-01 | 95.3% | 70.9% |
| 1cmjA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.55 | 44.0 | 2.89e-01 | 89.4% | 36.6% |
| 5wbwA01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.51 | 43.0 | 3.60e-01 | 96.5% | 74.5% |
| 1cscA01 | 1.10.580.10 | Mainly Alpha › Orthogonal Bundle › Citrate Synthase; domain 1 › Citrate Synthase, domain 1 | 0.50 | 40.0 | 2.88e-01 | 92.9% | 70.4% |
| 1eo0A00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.50 | 36.0 | 3.79e-01 | 98.8% | 85.7% |
| 4hjzA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.50 | 41.0 | 3.31e-01 | 94.1% | 86.9% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3681442 | 3711.1.1.4 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DOG1 | 0.55 | 45.0 | 3.53e-01 | 91.8% | 68.2% |
| 5032026 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.54 | 39.0 | 2.59e-01 | 76.5% | 30.0% |
| 5055634 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.53 | 37.0 | 3.82e-01 | 96.5% | 76.2% |
| 3450864 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.53 | 40.0 | 3.44e-01 | 84.7% | 82.7% |
| 4835580 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.52 | 39.0 | 3.29e-01 | 80.0% | 74.2% |
| 3314000 | 606.1.1.10 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › DOG1 | 0.52 | 40.0 | 3.12e-01 | 83.5% | 83.1% |
| 4976446 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.50 | 38.0 | 2.77e-01 | 84.7% | 95.4% |