←Back to structures

NC_070763.1__YP_010648959.1__PP303_gp079__00079

Bact-Vir

NC_070763.1__YP_010648959.1__PP303_gp079__00079

Identity

Accession:
NC_070763 ↗
Kingdom:
phage

Quality

78.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Forzavirus› Gordonia_phage_Forza

TaxID: 2571247

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-71
PDB
Domain cluster: rep: OQ999401.1__WJZ48512.1__X__00096__D15-94
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.67 53.0 4.21e-01 84.8% 94.7%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.63 40.0 3.24e-01 84.8% 31.4%
3ihpA03 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 43.0 2.79e-01 84.8% 14.6%
1mo9A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 33.0 2.63e-01 97.0% 25.2%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 45.0 2.97e-01 84.8% 20.5%
4a2bA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 44.0 3.49e-01 80.3% 96.4%
3bqjA01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.58 45.0 3.30e-01 98.5% 29.2%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.68e-01 83.3% 74.1%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.56 40.0 4.25e-01 86.4% 87.9%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 42.0 3.50e-01 86.4% 43.9%
4p25D01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.56 43.0 3.18e-01 98.5% 29.4%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 41.0 2.76e-01 83.3% 91.7%
7qi3A01 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.54 45.0 3.01e-01 100.0% 42.3%
1cpyA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 40.0 2.63e-01 83.3% 62.2%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.57e-01 83.3% 79.6%
2knoA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 36.0 3.15e-01 71.2% 67.3%
4je0B01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 2.81e-01 75.8% 31.6%
3ml4A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.49e-01 83.3% 77.0%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.45e-01 86.4% 73.4%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 37.0 3.87e-01 78.8% 100.0%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.58e-01 83.3% 82.0%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 36.0 2.78e-01 75.8% 42.4%
2g3aA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 36.0 3.09e-01 74.2% 51.4%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 39.0 2.98e-01 89.4% 37.2%
1sr4B00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.51 35.0 2.38e-01 74.2% 19.4%
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 38.0 2.96e-01 83.3% 96.2%
7z6eA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.26e-01 86.4% 79.5%
6v55A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.07e-01 97.0% 73.3%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3442310 4.1.1.296 ↗ beta barrels › SH3 › SH3 › SH3 › TDBD 0.68 53.0 4.56e-01 84.8% 58.1%
3652837 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.66 52.0 4.74e-01 86.4% 63.3%
3680084 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.66 50.0 4.86e-01 84.8% 76.0%
5029334 219.1.1.76 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.64 51.0 3.79e-01 86.4% 40.5%
3376270 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.64 49.0 4.73e-01 84.8% 76.0%
5003416 3487.1.1.0 ↗ a+b three layers › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 0.63 46.0 3.90e-01 78.8% 79.8%
3386489 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.63 49.0 3.58e-01 83.3% 59.4%
3664710 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.62 48.0 4.51e-01 86.4% 67.1%
3547434 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 45.0 4.07e-01 80.3% 57.9%
3418449 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 44.0 2.68e-01 84.8% 11.5%
3759576 2484.1.1.288 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PML_C 0.61 48.0 3.30e-01 89.4% 60.8%
3606753 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 45.0 2.88e-01 84.8% 17.6%
4031064 4999.1.1.0 ↗ beta barrels › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX, C-terminal domain-like 0.59 43.0 4.52e-01 95.5% 94.5%
4057793 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.59 43.0 3.28e-01 78.8% 73.3%
4024708 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 42.0 2.70e-01 84.8% 13.9%
3716949 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 44.0 2.86e-01 84.8% 19.2%
3180879 243.3.1.50 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF7728 0.57 43.0 3.55e-01 83.3% 94.4%
4467867 3784.1.1.0 ↗ a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.57 44.0 3.50e-01 86.4% 59.3%
3725795 304.126.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.56 41.0 3.41e-01 81.8% 80.8%
3244743 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 40.0 3.20e-01 84.8% 35.3%
3711375 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 40.0 2.48e-01 83.3% 63.7%
3780338 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 37.0 2.32e-01 71.2% 37.4%
3888035 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.69e-01 86.4% 61.0%
3212583 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.53 46.0 4.03e-01 97.0% 67.0%
3505589 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.53 30.0 2.55e-01 95.5% 29.2%
3231010 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 41.0 3.24e-01 87.9% 64.5%
4301684 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.53 37.0 2.88e-01 78.8% 66.7%
3502838 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.53 33.0 3.58e-01 97.0% 76.4%
3883864 10.1.1.9 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY 0.52 41.0 3.02e-01 87.9% 63.8%
3562329 10.1.1.5 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin 0.52 41.0 2.97e-01 89.4% 48.8%
3623296 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 42.0 3.14e-01 89.4% 54.1%
4937307 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 42.0 3.17e-01 97.0% 53.2%
4106342 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.52 39.0 3.55e-01 81.8% 83.3%
3638833 219.1.1.6 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.51 45.0 3.17e-01 100.0% 64.1%
3498575 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.51 39.0 3.45e-01 83.3% 72.0%
4592291 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 3.02e-01 77.3% 73.1%
None — 0.50 38.0 3.34e-01 83.3% 73.3%