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NC_070763.1__YP_010648962.1__PP303_gp082__00082

Bact-Vir

NC_070763.1__YP_010648962.1__PP303_gp082__00082

Identity

Accession:
NC_070763 ↗
Kingdom:
phage

Quality

66.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Forzavirus› Gordonia_phage_Forza

TaxID: 2571247

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 182-252
PDB
Domain cluster: rep: OK040794.1__UDL16767.1__SEA_ATUIN_173__00173__D299-396
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h41A03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.62 46.0 3.83e-01 81.7% 45.2%
6biqC01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.61 44.0 3.76e-01 81.7% 45.5%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 39.0 4.15e-01 77.5% 78.3%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.56 41.0 3.91e-01 80.3% 96.5%
5ikuA01 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.55 35.0 3.11e-01 83.1% 44.2%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 40.0 2.68e-01 78.9% 88.6%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 38.0 2.65e-01 78.9% 91.1%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 39.0 2.59e-01 80.3% 17.7%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 39.0 3.31e-01 83.1% 44.3%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 38.0 3.88e-01 77.5% 94.0%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.51e-01 84.5% 86.1%
4qiwB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.51 37.0 2.92e-01 77.5% 87.7%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 37.0 2.53e-01 78.9% 92.7%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 35.0 3.18e-01 73.2% 63.1%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 38.0 3.90e-01 81.7% 86.8%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 40.0 2.64e-01 94.4% 65.0%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 37.0 4.04e-01 80.3% 100.0%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.50 36.0 2.78e-01 78.9% 49.4%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3801806 3459.1.1.3 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.61 46.0 3.94e-01 81.7% 98.3%
2410168 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.60 45.0 3.67e-01 81.7% 43.2%
3257922 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.60 42.0 3.83e-01 80.3% 54.7%
3173480 3755.4.1.28 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Kre28 0.57 40.0 3.75e-01 74.6% 78.9%
3804059 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 40.0 2.74e-01 78.9% 86.2%
None — 0.55 42.0 3.33e-01 81.7% 64.8%
4009281 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.55 40.0 3.59e-01 83.1% 53.3%
3388829 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 40.0 2.55e-01 80.3% 77.4%
4673831 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.55 39.0 3.10e-01 78.9% 65.9%
4076563 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 39.0 2.64e-01 78.9% 85.5%
4024247 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 39.0 2.53e-01 78.9% 87.7%
3638485 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 39.0 2.67e-01 80.3% 19.7%
3532104 219.1.1.97 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.53 40.0 2.79e-01 83.1% 27.5%
3842107 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 38.0 2.53e-01 77.5% 83.0%
3339169 4.1.1.415 ↗ beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.53 37.0 3.57e-01 81.7% 63.5%
3619467 220.1.1.84 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.53 39.0 3.48e-01 81.7% 79.1%
3903323 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 40.0 3.99e-01 83.1% 77.3%
3679910 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 38.0 2.81e-01 78.9% 26.2%
3684619 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 37.0 2.46e-01 78.9% 92.2%
3807424 219.1.1.112 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.53 38.0 2.55e-01 78.9% 88.6%
5029321 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.01e-01 80.3% 97.6%
3662916 5.3.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.52 35.0 2.88e-01 70.4% 89.0%
3460558 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 37.0 2.58e-01 80.3% 88.5%
3233993 76.1.1.3 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › VOMI 0.51 46.0 3.52e-01 98.6% 74.8%
3311685 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 37.0 2.76e-01 78.9% 89.3%
3502530 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 36.0 2.45e-01 78.9% 88.1%
3704678 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.51 39.0 3.04e-01 84.5% 64.2%
3236014 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.50 36.0 2.44e-01 78.9% 91.4%
1114686 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.50 33.0 3.55e-01 78.9% 85.7%
3597636 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.50 38.0 2.73e-01 85.9% 25.4%
D2 medium residues 14-71
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3eupB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.84 71.0 4.75e-01 91.4% 49.5%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.82 57.0 4.30e-01 72.4% 38.2%
2qr4A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.75 54.0 5.88e-01 81.0% 95.7%
3zfiA00 1.10.890.40 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › 0.73 53.0 4.48e-01 75.9% 49.5%
2nwlC00 1.10.3860.10 Mainly Alpha › Orthogonal Bundle › Proton glutamate symport protein › Sodium:dicarboxylate symporter 0.69 65.0 3.78e-01 100.0% 15.1%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.69 61.0 4.58e-01 100.0% 88.2%
2qk1A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.69 53.0 3.48e-01 82.8% 31.8%
3ix7A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.68 56.0 4.22e-01 87.9% 48.1%
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.68 59.0 4.56e-01 96.6% 65.9%
4y5jA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 52.0 3.46e-01 86.2% 44.5%
7dvqK01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 53.0 3.70e-01 89.7% 41.6%
2e8gA01 1.20.1440.150 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.64 50.0 4.01e-01 89.7% 84.7%
3oyxA02 1.20.58.1560 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 45.0 4.33e-01 77.6% 65.7%
2mhkA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 46.0 3.58e-01 77.6% 64.8%
1oyzA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 51.0 3.25e-01 89.7% 44.0%
4ffbC00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 49.0 3.30e-01 91.4% 59.3%
3c2gA02 1.10.10.1630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sys-1 C-terminal domain-like 0.59 45.0 4.30e-01 82.8% 98.5%
3c1oA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.56 42.0 3.33e-01 82.8% 60.5%
1br2A04 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 45.0 3.28e-01 94.8% 97.6%
2pt1A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 38.0 2.87e-01 81.0% 83.9%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4466948 5060.1.1.2 ↗ alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › DUF2764 0.80 63.0 4.52e-01 84.5% 73.1%
3169118 611.3.1.1 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.76 70.0 5.96e-01 100.0% 91.1%
3831252 611.3.1.1 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.74 68.0 5.29e-01 100.0% 69.5%
3688025 109.4.1.2631 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, IBN_N, HEAT_EZ, HEAT_GCN1 0.74 68.0 3.93e-01 100.0% 17.3%
4572709 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.73 54.0 4.58e-01 87.9% 50.0%
3184988 109.4.1.1345 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, IBN_N, HEAT_EZ, TPR_IMB1 0.73 67.0 3.67e-01 100.0% 9.5%
4266978 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.73 55.0 4.65e-01 89.7% 51.1%
3605713 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.72 54.0 4.78e-01 81.0% 95.3%
3735169 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.72 62.0 3.66e-01 94.8% 69.3%
3679557 611.3.1.1 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.72 65.0 5.69e-01 100.0% 94.1%
4029205 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.70 63.0 3.52e-01 100.0% 12.1%
3833474 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.69 60.0 4.97e-01 94.8% 83.0%
3541263 604.1.1.227 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF27002 0.69 62.0 4.60e-01 100.0% 84.1%
3971315 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.68 47.0 3.94e-01 72.4% 41.9%
3364217 109.4.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm 0.68 53.0 3.82e-01 82.8% 46.4%
3543949 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 53.0 3.46e-01 82.8% 56.5%
3601288 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 59.0 3.69e-01 94.8% 28.3%
3297319 611.3.1.1 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.68 61.0 5.13e-01 100.0% 86.3%
4024303 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 59.0 3.72e-01 100.0% 26.2%
3342220 109.4.1.1495 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26522 0.67 60.0 3.74e-01 100.0% 27.4%
3215219 371.1.1.0 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.67 57.0 4.65e-01 94.8% 83.3%
3304276 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 55.0 3.10e-01 87.9% 13.1%
3611674 109.4.1.1276 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT, HEAT_ATR 0.66 51.0 3.52e-01 82.8% 34.9%
3935888 109.4.1.337 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ipi1_N 0.66 52.0 3.44e-01 82.8% 34.4%
3197862 109.4.1.298 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VPS15-like_hel 0.66 56.0 3.82e-01 94.8% 42.9%
3417019 109.4.1.298 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VPS15-like_hel 0.66 51.0 3.49e-01 82.8% 34.7%
3511603 109.4.1.371 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RTP1_C1 0.65 54.0 3.25e-01 89.7% 30.3%
3735292 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 51.0 3.24e-01 94.8% 23.0%
3268903 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 51.0 3.23e-01 89.7% 42.9%
3577291 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 50.0 3.87e-01 91.4% 81.5%
4136151 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.57 51.0 4.17e-01 98.3% 56.0%
4147979 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.57 50.0 4.17e-01 96.6% 59.0%
4441546 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.57 49.0 4.08e-01 98.3% 55.0%
3962969 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.52 39.0 3.49e-01 86.2% 65.6%
D3 medium residues 78-155
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.66 40.0 4.67e-01 75.6% 94.0%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 40.0 4.56e-01 79.5% 98.2%
1uapA00 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 44.0 3.82e-01 87.2% 89.3%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 3.94e-01 76.9% 75.3%
3kbgA02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.54 26.0 3.03e-01 78.2% 62.3%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 38.0 2.84e-01 75.6% 38.2%
2mm0A00 2.10.70.110 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.52 39.0 4.28e-01 80.8% 100.0%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 4.21e-01 89.7% 100.0%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 37.0 4.07e-01 74.4% 98.3%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.52 33.0 3.78e-01 75.6% 89.7%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.80e-01 92.3% 97.6%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.50 43.0 2.98e-01 100.0% 32.9%
3zv0C01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.50 29.0 2.43e-01 97.4% 28.9%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
7620 4043.1.1.1 ↗ a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 0.63 45.0 4.06e-01 98.7% 53.2%
1223288 4246.1.1.0 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit 0.62 44.0 4.72e-01 98.7% 92.1%
5070342 4043.1.1.2 ↗ a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 0.61 42.0 4.08e-01 98.7% 63.3%
3571487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 40.0 4.10e-01 74.4% 72.6%
3521829 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.60 51.0 4.56e-01 97.4% 73.9%
3818428 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.59 39.0 4.02e-01 76.9% 70.7%
3329059 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.59 37.0 4.32e-01 71.8% 98.0%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.58 38.0 4.08e-01 76.9% 80.0%
3850775 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.57 36.0 3.87e-01 76.9% 76.9%
3558188 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.57 42.0 4.28e-01 98.7% 82.7%
3404643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 36.0 3.80e-01 71.8% 72.9%
3908016 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.56 45.0 4.61e-01 87.2% 92.0%
3342430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 37.0 3.75e-01 76.9% 70.7%
3475240 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.55 35.0 3.95e-01 70.5% 90.9%
3229435 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.55 33.0 2.62e-01 93.6% 25.6%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.55 39.0 3.97e-01 76.9% 77.3%
4979962 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.55 35.0 3.67e-01 76.9% 75.4%
3417299 4043.1.1.2 ↗ a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 0.55 44.0 3.74e-01 98.7% 53.1%
3712063 4043.1.1.2 ↗ a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 0.54 42.0 3.62e-01 98.7% 50.4%
3598657 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 39.0 3.59e-01 76.9% 63.0%
3495652 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 3.29e-01 87.2% 41.2%
3411858 4.1.1.456 ↗ beta barrels › SH3 › SH3 › SH3 › BAH, BAHCC1-like_Tudor, SH3_TNRC18 0.53 46.0 2.92e-01 100.0% 19.3%
3961546 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.52 33.0 3.57e-01 74.4% 76.9%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 37.0 4.17e-01 76.9% 100.0%
3533770 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.51 39.0 3.61e-01 94.9% 61.9%
3719595 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.96e-01 83.3% 98.3%
3419491 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 34.0 3.78e-01 75.6% 91.7%
5065570 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.51 38.0 3.74e-01 82.1% 89.4%
3706786 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 40.0 4.06e-01 94.9% 93.3%
4931724 206.1.3.36 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_TupA 0.51 37.0 2.57e-01 79.5% 29.4%
3479576 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 38.0 3.44e-01 84.6% 92.2%
D4 medium residues 324-397
PDB
D5 medium residues 402-458
PDB
Domain cluster: rep: MN908685.1__QIG57821.1__SEA_PAULODIABOLI_87__00087__D658-705