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NC_070763.1__YP_010648968.1__PP303_gp088__00088

Bact-Vir

NC_070763.1__YP_010648968.1__PP303_gp088__00088

Identity

Accession:
NC_070763 ↗
Kingdom:
phage

Quality

67.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Forzavirus› Gordonia_phage_Forza

TaxID: 2571247

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-16_114-227
PDB
Domain cluster: rep: DQ340064.2__ABC61276.1__X__00022__D272-425
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dktA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.66 45.0 5.22e-01 85.4% 95.8%
7mh2A01 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.65 45.0 5.31e-01 83.8% 100.0%
2znhA03 6.20.40.10 Special › Other non-globular › Porin MspA ribbon fold › 0.61 24.0 3.58e-01 86.9% 93.6%
1kjnA00 3.40.50.10160 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MTH777-like 0.60 38.0 3.61e-01 87.7% 53.3%
4efaE02 3.30.2320.30 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal 0.58 42.0 4.21e-01 83.8% 73.6%
2dm9A00 3.30.2320.30 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal 0.58 40.0 4.21e-01 83.8% 78.8%
6vq6I01 3.30.2320.30 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal 0.55 40.0 4.29e-01 83.8% 89.8%
2bx2L02 3.40.1260.20 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › Ribonuclease E, catalytic domain 0.51 37.0 3.98e-01 76.2% 88.2%
2f7lA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.51 33.0 3.71e-01 80.8% 86.7%
1oi2A02 3.30.1180.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 0.51 36.0 3.40e-01 73.8% 95.1%
1tr8A01 2.20.70.30 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain 0.50 22.0 3.08e-01 88.5% 94.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2988313 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.78 71.0 5.54e-01 99.2% 92.6%
4306281 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.76 43.0 5.01e-01 82.3% 76.8%
2806362 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.74 66.0 5.18e-01 96.9% 87.5%
4292828 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.73 40.0 4.63e-01 82.3% 73.7%
4994471 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.72 41.0 4.68e-01 82.3% 75.8%
4300951 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.71 39.0 4.19e-01 82.3% 60.9%
2806361 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.70 63.0 5.03e-01 99.2% 91.2%
4560058 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.67 39.0 4.19e-01 83.1% 65.2%
4622618 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.67 40.0 4.30e-01 83.8% 67.8%
4990473 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.67 39.0 4.58e-01 82.3% 83.3%
4201753 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.66 42.0 4.27e-01 84.6% 64.6%
4513585 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.65 42.0 3.65e-01 84.6% 43.1%
4559262 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.64 40.0 4.29e-01 83.1% 72.7%
4960220 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.63 40.0 4.21e-01 83.8% 71.3%
4113623 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.63 37.0 3.33e-01 83.8% 41.1%
4404129 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.63 39.0 3.40e-01 83.8% 41.6%
4197190 812.1.1.1 ↗ a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE 0.61 20.0 2.89e-01 83.1% 60.0%
4261555 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.61 39.0 3.64e-01 83.8% 50.9%
4093705 298.3.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like 0.56 44.0 4.15e-01 82.3% 81.9%
4132432 298.3.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like 0.55 43.0 4.09e-01 83.1% 83.2%
4156749 3234.1.1.2 ↗ a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N 0.54 39.0 3.05e-01 73.1% 68.4%
D2 medium residues 17-35_57-113
PDB