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NC_070764.1__YP_010649055.1__PP304_gp011__00011

Bact-Vir

NC_070764.1__YP_010649055.1__PP304_gp011__00011

Identity

Accession:
NC_070764 ↗
Kingdom:
phage

Quality

72.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Godonkavirus› Gordonia_phage_Phendrix

TaxID: 2593335

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.80 59.0 4.29e-01 100.0% 29.9%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.75 66.0 5.56e-01 100.0% 88.8%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.74 65.0 5.56e-01 98.1% 100.0%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.73 63.0 3.93e-01 100.0% 90.6%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.69 56.0 5.33e-01 100.0% 75.4%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.68 59.0 4.07e-01 100.0% 36.2%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.68 58.0 4.38e-01 100.0% 83.6%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 57.0 4.19e-01 100.0% 83.6%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 55.0 4.12e-01 100.0% 60.3%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.64 55.0 4.38e-01 100.0% 74.1%
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 56.0 4.12e-01 100.0% 84.3%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.63 49.0 3.48e-01 88.5% 28.9%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 52.0 4.53e-01 100.0% 75.3%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.63 54.0 4.06e-01 100.0% 75.4%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 4.46e-01 100.0% 76.9%
2jj6A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 54.0 4.06e-01 100.0% 90.3%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.61 49.0 4.50e-01 98.1% 86.8%
1wdiA02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.61 47.0 4.26e-01 86.5% 91.8%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 49.0 3.96e-01 100.0% 95.0%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 4.31e-01 100.0% 81.6%
3oc4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 45.0 3.53e-01 86.5% 95.8%
2vy0B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 3.20e-01 100.0% 59.3%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 47.0 3.00e-01 100.0% 79.2%
2ghsA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 46.0 3.01e-01 100.0% 63.7%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 44.0 3.61e-01 90.4% 76.9%
4gniB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 44.0 3.24e-01 88.5% 71.9%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.57 41.0 3.09e-01 82.7% 66.9%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 43.0 3.43e-01 86.5% 81.4%
2cwsA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 3.09e-01 100.0% 59.9%
3i7dA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 37.0 2.76e-01 75.0% 58.6%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.26e-01 98.1% 55.6%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 36.0 3.31e-01 82.7% 51.4%
1jlxA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 43.0 3.32e-01 100.0% 97.1%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3468148 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.76 65.0 4.41e-01 100.0% 26.2%
3463325 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.76 66.0 4.22e-01 100.0% 92.5%
4988423 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.76 64.0 5.65e-01 98.1% 82.5%
3823449 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.75 64.0 4.02e-01 100.0% 17.6%
3512735 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.74 65.0 4.23e-01 100.0% 60.9%
3431347 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.72 54.0 3.48e-01 82.7% 32.5%
3436173 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.71 62.0 3.83e-01 100.0% 92.3%
3925754 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.71 55.0 4.13e-01 86.5% 37.8%
3427234 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.71 62.0 4.00e-01 100.0% 21.6%
3929729 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.70 61.0 4.15e-01 100.0% 70.3%
4940942 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 59.0 4.97e-01 100.0% 78.5%
5059099 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.69 56.0 4.80e-01 94.2% 60.2%
3263647 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 58.0 4.56e-01 100.0% 60.8%
3579987 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.69 59.0 4.69e-01 100.0% 64.5%
3489732 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 59.0 4.68e-01 100.0% 76.4%
3476015 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.68 58.0 4.81e-01 98.1% 73.7%
3404845 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.68 57.0 4.81e-01 100.0% 72.6%
3218185 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 57.0 3.84e-01 100.0% 31.6%
3247669 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.67 57.0 3.70e-01 100.0% 23.2%
4100425 11.1.4.90 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF4550 0.67 58.0 4.40e-01 100.0% 60.8%
3222321 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.67 57.0 3.71e-01 100.0% 24.7%
3903537 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.67 57.0 4.51e-01 100.0% 69.6%
3500471 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.66 56.0 4.27e-01 100.0% 56.2%
3937784 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.65 54.0 4.16e-01 100.0% 56.2%
3225057 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 54.0 3.81e-01 100.0% 34.1%
4001788 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.65 54.0 4.11e-01 100.0% 62.9%
3475699 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.64 54.0 4.45e-01 100.0% 66.7%
3212555 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.64 52.0 4.05e-01 98.1% 47.7%
3493400 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.64 53.0 4.38e-01 100.0% 68.6%
3290662 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 54.0 4.14e-01 100.0% 40.0%
3506427 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.63 51.0 4.06e-01 98.1% 72.0%
None — 0.63 52.0 4.05e-01 100.0% 54.6%
3242374 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.63 53.0 4.28e-01 100.0% 69.4%
4106342 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.63 52.0 4.48e-01 100.0% 78.9%
None — 0.63 52.0 4.30e-01 100.0% 66.7%
3533183 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.62 51.0 4.28e-01 100.0% 67.0%
4681650 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.62 54.0 3.75e-01 100.0% 68.6%
3907329 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.62 51.0 3.98e-01 100.0% 54.6%
3496370 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 51.0 3.96e-01 100.0% 54.6%
3772701 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.62 51.0 3.92e-01 100.0% 51.1%
3909375 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 50.0 3.87e-01 100.0% 52.6%
3970772 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 45.0 3.62e-01 84.6% 64.9%
3497738 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 50.0 3.87e-01 100.0% 52.3%
3436491 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.60 50.0 3.68e-01 100.0% 56.9%
None — 0.60 51.0 3.89e-01 100.0% 54.6%
None — 0.60 49.0 3.83e-01 100.0% 55.4%
3482451 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.60 51.0 3.55e-01 100.0% 62.6%
None — 0.59 49.0 4.07e-01 100.0% 67.6%
3406312 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.59 48.0 3.61e-01 100.0% 37.4%
3487656 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 48.0 4.12e-01 100.0% 73.7%
3630369 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.59 48.0 3.72e-01 100.0% 52.6%
3690784 10.1.1.22 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF1349 0.58 49.0 3.29e-01 100.0% 75.7%
5062226 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.58 47.0 3.24e-01 94.2% 66.5%
3532957 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.58 47.0 3.61e-01 100.0% 50.7%
3254772 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 51.0 3.39e-01 100.0% 74.4%
1688207 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.57 46.0 2.98e-01 100.0% 64.2%
3164205 813.1.1.3 ↗ a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone_3 0.57 49.0 3.62e-01 100.0% 71.0%
5014257 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.54 45.0 3.14e-01 98.1% 69.2%
3595430 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 43.0 3.07e-01 100.0% 65.5%