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NC_070764.1__YP_010649067.1__PP304_gp023__00023

Bact-Vir

NC_070764.1__YP_010649067.1__PP304_gp023__00023

Identity

Accession:
NC_070764 ↗
Kingdom:
phage

Quality

74.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-63
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 57.0 4.66e-01 89.8% 49.5%
4z32A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 50.0 4.27e-01 89.8% 49.0%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 53.0 3.93e-01 89.8% 42.5%
2fjlA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 49.0 3.73e-01 84.7% 36.0%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.63 49.0 4.18e-01 93.2% 50.0%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 50.0 4.21e-01 89.8% 51.0%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 49.0 3.93e-01 88.1% 41.6%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 51.0 4.19e-01 93.2% 48.6%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 49.0 4.24e-01 89.8% 54.7%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 46.0 4.09e-01 83.1% 55.2%
2a9sB00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.62 53.0 3.85e-01 96.6% 40.0%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 54.0 3.47e-01 100.0% 81.9%
2kucA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 43.0 3.46e-01 74.6% 81.8%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.75e-01 88.1% 43.5%
1vw4400 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 51.0 3.99e-01 98.3% 75.4%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.61 37.0 3.23e-01 81.4% 38.5%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.79e-01 86.4% 47.3%
2bseA00 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.59 41.0 3.37e-01 71.2% 94.4%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 40.0 3.01e-01 100.0% 26.2%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 43.0 3.93e-01 83.1% 58.1%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 46.0 3.93e-01 88.1% 52.0%
3n4eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 46.0 3.96e-01 93.2% 65.4%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.63e-01 88.1% 43.0%
1uv4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 41.0 2.66e-01 76.3% 35.7%
1kmdA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 49.0 3.98e-01 98.3% 83.8%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.73e-01 84.7% 51.0%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.58 46.0 4.36e-01 94.9% 74.6%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 3.71e-01 93.2% 56.2%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 37.0 3.54e-01 71.2% 56.2%
4hwtA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 44.0 3.74e-01 93.2% 100.0%
3rr1A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 46.0 3.68e-01 100.0% 51.8%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.50e-01 86.4% 53.8%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.57e-01 89.8% 47.9%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.56 45.0 4.19e-01 94.9% 71.1%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.55 40.0 3.87e-01 79.7% 85.7%
4e4fA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 45.0 3.58e-01 100.0% 51.8%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.47e-01 88.1% 45.9%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 47.0 3.69e-01 100.0% 77.7%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 36.0 3.40e-01 71.2% 55.4%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 42.0 3.60e-01 93.2% 77.4%
2kumA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 38.0 3.91e-01 79.7% 84.2%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.55e-01 76.3% 75.0%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 36.0 3.47e-01 76.3% 64.8%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 36.0 2.85e-01 74.6% 52.0%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.51 42.0 3.42e-01 94.9% 100.0%
3vrdB03 3.90.760.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain 0.51 37.0 3.49e-01 79.7% 83.8%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075465 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.73 61.0 6.14e-01 94.9% 90.0%
3791940 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 61.0 5.09e-01 94.9% 54.0%
3624043 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 62.0 4.32e-01 94.9% 30.0%
3573862 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 62.0 4.20e-01 94.9% 27.1%
3873956 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.71 57.0 4.54e-01 89.8% 43.3%
4001239 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 54.0 4.67e-01 89.8% 52.6%
3797707 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 57.0 4.35e-01 94.9% 39.3%
3841924 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.70 54.0 4.37e-01 88.1% 44.5%
3311849 2485.1.1.35 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 0.70 54.0 4.40e-01 86.4% 88.7%
3641570 3131.1.1.1 a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.69 57.0 4.25e-01 98.3% 36.0%
3212337 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 49.0 4.16e-01 89.8% 45.0%
3887124 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 57.0 4.08e-01 93.2% 32.0%
3634755 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 54.0 4.22e-01 89.8% 42.4%
3627615 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.66 55.0 4.14e-01 93.2% 42.1%
3414950 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 50.0 3.99e-01 81.4% 41.7%
3801512 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 54.0 4.36e-01 93.2% 50.8%
3538314 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 54.0 4.36e-01 93.2% 45.8%
3865191 220.1.1.61 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.66 51.0 4.21e-01 89.8% 46.4%
3728854 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 54.0 5.28e-01 96.6% 84.6%
3659150 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 53.0 4.28e-01 89.8% 46.1%
3555102 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 52.0 4.14e-01 88.1% 44.2%
3264990 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 52.0 4.20e-01 93.2% 45.2%
3722454 220.1.1.92 beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.65 51.0 3.80e-01 88.1% 41.1%
3716892 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 52.0 4.12e-01 88.1% 52.8%
3939443 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.65 55.0 4.54e-01 96.6% 82.7%
5001324 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 49.0 4.14e-01 88.1% 47.6%
3861121 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 51.0 4.17e-01 91.5% 46.1%
5031433 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 48.0 4.06e-01 86.4% 49.0%
5023580 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 45.0 4.38e-01 86.4% 69.2%
3273237 220.1.1.26 beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.63 49.0 3.91e-01 86.4% 41.6%
3784108 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.63 45.0 3.58e-01 78.0% 72.3%
3787887 896.1.1.2 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.62 49.0 4.65e-01 94.9% 71.2%
3924545 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.62 51.0 4.16e-01 100.0% 46.7%
3233138 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.62 46.0 3.45e-01 79.7% 64.7%
1511313 214.1.1.3 a+b two layers › SH2 › SH2 › SH2 › Cbl_N3 0.62 45.0 4.02e-01 83.1% 53.3%
4929228 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.61 43.0 3.65e-01 88.1% 44.4%
3788141 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 49.0 4.63e-01 93.2% 78.7%
3750640 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.61 49.0 4.05e-01 93.2% 49.1%
3570692 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.60 46.0 3.81e-01 89.8% 44.3%
3214097 330.1.1.24 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Paxt-1_C 0.60 51.0 4.61e-01 98.3% 94.1%
3931156 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 49.0 4.72e-01 96.6% 87.1%
5006851 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.59 48.0 4.57e-01 96.6% 78.4%
3225003 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 49.0 3.89e-01 93.2% 45.0%
3211867 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 42.0 3.50e-01 84.7% 41.8%
3718868 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 3.51e-01 86.4% 37.2%
3742641 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.58 48.0 3.96e-01 91.5% 50.9%
3797728 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 4.17e-01 91.5% 62.4%
3347210 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 4.03e-01 89.8% 59.1%
3973892 3994.1.1.2 a+b two layers › C-P lyase subunit PhnG › C-P lyase subunit PhnG › C-P lyase subunit PhnG › PhnG 0.58 45.0 3.66e-01 84.7% 45.2%
3422528 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 4.46e-01 89.8% 86.7%
3903728 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 3.81e-01 89.8% 51.0%
3493294 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 3.43e-01 89.8% 35.2%
3502939 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.57 47.0 4.15e-01 93.2% 66.7%
4322616 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.57 51.0 3.38e-01 98.3% 27.8%
3933119 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 3.61e-01 89.8% 40.8%
3295440 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 3.62e-01 100.0% 37.0%
3836701 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.56 43.0 3.26e-01 83.1% 36.5%
3887886 604.3.1.11 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.56 48.0 3.23e-01 98.3% 42.4%
3894506 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.56 37.0 3.58e-01 71.2% 58.6%
4462824 2003.1.5.174 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_15 0.55 39.0 2.40e-01 74.6% 38.1%
5024507 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 46.0 2.92e-01 100.0% 85.9%
3587282 142.1.1.10 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 0.55 48.0 4.60e-01 98.3% 85.7%
3591463 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.55 42.0 3.55e-01 89.8% 47.0%
4320111 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.55 45.0 3.90e-01 96.6% 100.0%
3255344 220.1.1.27 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.55 42.0 3.41e-01 86.4% 63.3%
3311131 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 43.0 3.19e-01 93.2% 31.7%
4980202 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 41.0 3.36e-01 88.1% 76.0%
3908519 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 43.0 3.48e-01 93.2% 45.6%
3682622 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 48.0 2.79e-01 100.0% 26.9%
3252821 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.40e-01 86.4% 50.0%
3589473 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 42.0 3.80e-01 86.4% 63.7%
4034416 2004.1.1.481 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_29 0.53 38.0 2.34e-01 91.5% 11.8%
4965528 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 44.0 3.07e-01 100.0% 74.2%
5007818 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 42.0 2.94e-01 100.0% 76.3%