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NC_070764.1__YP_010649106.1__PP304_gp062__00062

Bact-Vir

NC_070764.1__YP_010649106.1__PP304_gp062__00062

Identity

Accession:
NC_070764 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Godonkavirus› Gordonia_phage_Phendrix

TaxID: 2593335

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-114
PDB
Domain cluster: rep: OQ999401.1__WJZ48504.1__X__00088__D8-113
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.76 36.0 4.60e-01 71.4% 76.9%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 48.0 4.46e-01 80.4% 56.9%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 50.0 4.34e-01 79.5% 88.4%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 47.0 4.68e-01 74.1% 83.1%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.66 42.0 4.82e-01 72.3% 88.9%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 48.0 4.37e-01 79.5% 96.8%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 49.0 4.55e-01 82.1% 98.6%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 45.0 3.95e-01 74.1% 83.7%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 47.0 4.75e-01 100.0% 81.1%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 45.0 4.19e-01 81.2% 99.3%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 44.0 4.08e-01 80.4% 99.3%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 49.0 4.55e-01 99.1% 71.5%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 46.0 4.21e-01 83.9% 88.9%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 4.96e-01 92.0% 93.9%
5hy7B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 41.0 2.82e-01 75.0% 37.6%
3lf7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 43.0 2.92e-01 80.4% 46.4%
5nslA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 42.0 2.90e-01 80.4% 40.2%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 41.0 2.75e-01 77.7% 25.2%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.54 37.0 3.79e-01 70.5% 92.7%
3oblA00 2.40.128.450 Mainly Beta › Beta Barrel › Lipocalin › 0.52 40.0 3.85e-01 99.1% 69.7%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.91e-01 93.8% 89.8%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 39.0 4.14e-01 78.6% 100.0%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 42.0 2.97e-01 90.2% 67.1%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.51 36.0 2.80e-01 74.1% 60.4%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 30.0 3.70e-01 91.1% 98.5%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.50 45.0 3.91e-01 100.0% 71.3%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3658750 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.74 51.0 4.92e-01 70.5% 76.0%
3956000 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.69 36.0 4.45e-01 71.4% 80.0%
4960211 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.67 50.0 5.36e-01 92.0% 91.6%
3875866 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.65 47.0 4.10e-01 75.0% 84.7%
3897308 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.65 52.0 4.57e-01 85.7% 93.9%
4451493 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.64 49.0 4.29e-01 81.2% 86.0%
3471318 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 52.0 5.48e-01 95.5% 96.0%
3390227 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 49.0 5.03e-01 98.2% 87.6%
3523446 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.60 48.0 5.10e-01 98.2% 96.0%
3370313 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.59 53.0 4.63e-01 96.4% 94.5%
5019857 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.59 36.0 3.01e-01 73.2% 34.0%
4587235 220.1.1.197 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623 0.59 52.0 5.22e-01 99.1% 93.9%
3785172 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 42.0 2.99e-01 75.0% 27.4%
2797459 220.1.1.3 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1,Retinal 0.58 51.0 5.18e-01 98.2% 94.7%
3695026 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 4.87e-01 92.0% 90.8%
3617706 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 4.92e-01 86.6% 97.0%
3548416 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.57 47.0 4.64e-01 89.3% 91.7%
3637558 5.1.4.348 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_1st 0.57 40.0 2.78e-01 71.4% 37.0%
3191174 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 48.0 3.30e-01 93.8% 100.0%
3490456 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 4.35e-01 100.0% 71.7%
3480327 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.56 50.0 4.88e-01 99.1% 97.6%
4026002 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 41.0 2.85e-01 77.7% 26.9%
3804236 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 49.0 4.58e-01 100.0% 78.6%
3282412 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.55 39.0 3.87e-01 75.0% 73.2%
3250629 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.55 45.0 4.67e-01 89.3% 93.3%
3342304 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 48.0 4.34e-01 100.0% 71.0%
3211283 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.54 49.0 4.20e-01 100.0% 73.7%
3591236 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 2.83e-01 94.6% 58.5%
3710725 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 38.0 2.53e-01 75.9% 20.2%
3784777 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.52 46.0 4.09e-01 100.0% 75.2%
3379143 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.51 38.0 2.93e-01 77.7% 93.2%
4127750 11.2.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2, FerB 0.51 37.0 2.68e-01 77.7% 86.3%
3691812 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.50 45.0 3.88e-01 100.0% 75.0%
3926119 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 45.0 3.23e-01 97.3% 85.0%