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NC_070764.1__YP_010649163.1__PP304_gp204__00119

Bact-Vir

NC_070764.1__YP_010649163.1__PP304_gp204__00119

Identity

Accession:
NC_070764 ↗
Kingdom:
phage

Quality

85.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-118
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2sfaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.85 65.0 6.32e-01 100.0% 73.6%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.71 41.0 3.20e-01 100.0% 28.9%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 35.0 4.09e-01 100.0% 71.0%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 55.0 5.26e-01 100.0% 77.8%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 42.0 4.41e-01 85.9% 74.7%
1eq9A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 56.0 5.03e-01 100.0% 77.8%
5fcrA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 56.0 4.95e-01 100.0% 77.9%
5fahA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 56.0 5.03e-01 100.0% 76.9%
3aqoA02 3.30.1360.200 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.60 54.0 4.57e-01 100.0% 86.5%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 46.0 4.37e-01 90.6% 70.0%
3h7tB01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 54.0 4.76e-01 100.0% 79.5%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 48.0 4.55e-01 100.0% 75.2%
5egwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 43.0 2.79e-01 100.0% 18.5%
2z84A00 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.57 37.0 2.77e-01 100.0% 26.7%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 33.0 3.78e-01 100.0% 79.0%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 48.0 4.01e-01 100.0% 74.4%
2bhoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 36.0 3.38e-01 100.0% 51.8%
2jn9A01 2.40.30.80 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YkvR-like 0.55 48.0 4.76e-01 100.0% 97.8%
8jj7A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 2.97e-01 91.8% 82.7%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4974463 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.79 58.0 4.61e-01 100.0% 39.9%
5023947 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.75 57.0 4.45e-01 100.0% 40.0%
4960051 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 61.0 4.72e-01 100.0% 47.7%
3694033 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.66 55.0 4.67e-01 100.0% 55.0%
3495447 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 37.0 3.24e-01 100.0% 39.2%
4501723 4.8.1.45 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.63 34.0 4.08e-01 100.0% 80.0%
3249578 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.62 42.0 4.20e-01 90.6% 69.4%
3504279 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.61 55.0 3.91e-01 100.0% 39.6%
3273842 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 40.0 4.02e-01 87.1% 67.1%
3607981 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 37.0 3.93e-01 100.0% 70.3%
3502140 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.60 53.0 3.82e-01 100.0% 38.0%
3226149 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 50.0 4.52e-01 92.9% 74.8%
3957641 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.59 30.0 3.57e-01 100.0% 72.7%
3265576 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 37.0 3.98e-01 84.7% 77.1%
3668220 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.58 43.0 2.90e-01 100.0% 22.8%
3249573 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 37.0 3.81e-01 90.6% 70.0%
3795831 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.57 41.0 4.47e-01 84.7% 97.1%
3390463 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.56 36.0 4.06e-01 81.2% 87.7%
3250297 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.55 42.0 2.85e-01 100.0% 23.9%
3510207 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.55 49.0 3.76e-01 100.0% 43.7%
3597789 219.1.1.4 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.53 43.0 2.84e-01 100.0% 22.8%
3313137 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.53 39.0 3.14e-01 100.0% 40.6%
4074461 309.1.1.3 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › LuxS 0.51 40.0 3.23e-01 84.7% 45.3%
3244679 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.51 41.0 2.63e-01 100.0% 19.0%
3422227 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.51 36.0 2.44e-01 100.0% 20.3%
3617446 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.51 38.0 3.62e-01 81.2% 78.1%
3460287 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.51 38.0 3.06e-01 100.0% 41.9%
D2 high residues 133-212
PDB
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.85 81.0 5.78e-01 100.0% 86.2%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.85 79.0 7.24e-01 97.5% 89.9%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.85 78.0 6.98e-01 97.5% 91.6%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.82 75.0 6.74e-01 96.2% 85.6%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.81 75.0 6.75e-01 97.5% 90.4%
1elvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 75.0 6.31e-01 100.0% 90.5%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 64.0 6.70e-01 90.0% 91.9%
1wqsA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 71.0 6.46e-01 97.5% 100.0%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 70.0 6.39e-01 97.5% 86.7%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.71 61.0 4.73e-01 95.0% 90.3%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.70 57.0 5.12e-01 88.7% 90.0%
3mcaA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.69 55.0 5.11e-01 87.5% 86.3%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 57.0 4.93e-01 93.8% 95.3%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 58.0 4.87e-01 96.2% 93.4%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 56.0 4.53e-01 95.0% 98.1%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 44.0 4.08e-01 70.0% 94.2%
3h7oA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 51.0 4.62e-01 88.7% 77.7%
7syvx01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 47.0 3.95e-01 77.5% 92.0%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 49.0 4.48e-01 80.0% 94.1%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.11e-01 72.5% 66.0%
2greF02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.63 42.0 4.33e-01 71.2% 71.8%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 4.69e-01 73.8% 93.8%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.23e-01 70.0% 98.7%
4qv2A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.58 41.0 3.64e-01 73.8% 78.8%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 3.96e-01 78.8% 90.2%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.58 39.0 3.03e-01 70.0% 61.2%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 46.0 2.93e-01 88.7% 60.0%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.55 38.0 3.36e-01 72.5% 70.2%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.54 38.0 3.54e-01 72.5% 90.1%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 4.17e-01 92.5% 92.4%
2cjsA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 42.0 3.50e-01 91.3% 58.2%
5u78C00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.70e-01 90.0% 93.1%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3952718 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.90 86.0 6.29e-01 100.0% 45.4%
3960372 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.90 79.0 7.70e-01 91.3% 88.2%
3278337 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.88 85.0 6.09e-01 100.0% 49.7%
5057746 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.87 82.0 6.06e-01 100.0% 46.8%
5019852 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.87 83.0 5.87e-01 100.0% 45.7%
3950458 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.87 81.0 6.07e-01 100.0% 48.3%
3277840 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.86 82.0 5.84e-01 100.0% 46.6%
3280223 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.86 82.0 5.91e-01 100.0% 42.6%
3278424 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.85 81.0 5.50e-01 100.0% 43.2%
5035938 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.85 81.0 5.60e-01 100.0% 43.1%
3960060 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.85 80.0 5.90e-01 100.0% 44.3%
5037776 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.85 80.0 5.60e-01 100.0% 41.8%
4934715 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.84 80.0 5.51e-01 100.0% 39.3%
2141908 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.83 79.0 5.73e-01 100.0% 51.8%
4485576 1.1.17.4 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.83 77.0 5.13e-01 100.0% 34.1%
3198319 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.82 76.0 4.88e-01 100.0% 31.0%
3248403 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.82 77.0 6.28e-01 100.0% 77.8%
3198252 1.1.17.4 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.82 76.0 5.81e-01 100.0% 55.3%
3204414 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.81 76.0 4.76e-01 100.0% 41.0%
3210702 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.81 76.0 5.03e-01 100.0% 44.3%
3204035 1.1.17.4 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.81 75.0 4.80e-01 100.0% 29.4%
3789008 1.1.5.85 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S64 0.80 75.0 4.86e-01 100.0% 33.3%
4113879 1.1.7.2 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.78 54.0 3.65e-01 71.2% 47.8%
3402403 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 69.0 4.67e-01 100.0% 79.6%
3406002 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.75 70.0 4.94e-01 100.0% 83.4%
5011536 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.72 61.0 5.24e-01 95.0% 91.5%
3517377 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 48.0 4.75e-01 72.5% 72.9%
4080130 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.68 46.0 4.78e-01 70.0% 100.0%
3913687 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 47.0 4.50e-01 73.8% 66.7%
3963913 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.66 55.0 4.63e-01 93.8% 90.7%
3220929 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 42.0 4.37e-01 70.0% 86.7%
4646593 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.60 41.0 3.48e-01 71.2% 83.7%
3273842 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 40.0 3.98e-01 75.0% 71.8%
3249579 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 43.0 4.44e-01 81.2% 100.0%
3964422 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 39.0 3.10e-01 71.2% 41.9%
3198544 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 43.0 3.87e-01 100.0% 59.1%
3537472 11.1.1.185 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DBB 0.56 42.0 3.91e-01 82.5% 81.0%
3782999 219.1.1.115 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.56 38.0 3.22e-01 71.2% 71.0%
3276555 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 4.00e-01 82.5% 97.8%
3265709 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.54 41.0 4.11e-01 85.0% 100.0%
3253267 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 44.0 4.35e-01 98.8% 82.4%
3533362 220.1.1.47 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.51 42.0 3.33e-01 90.0% 65.5%
5001287 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 38.0 3.67e-01 81.2% 98.9%