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NC_070764.1__YP_010649185.1__PP304_gp182__00141

Bact-Vir

NC_070764.1__YP_010649185.1__PP304_gp182__00141

Identity

Accession:
NC_070764 ↗
Kingdom:
phage

Quality

62.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-55
PDB
Domain cluster: representative
CATH (64)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.78 57.0 4.01e-01 100.0% 25.5%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.76 61.0 4.64e-01 100.0% 37.2%
3c7xA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.74 61.0 4.02e-01 95.5% 60.2%
3kihC01 2.20.25.510 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.74 49.0 5.37e-01 88.6% 91.2%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.72 61.0 5.17e-01 100.0% 80.3%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 60.0 5.41e-01 100.0% 75.4%
3nksA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.72 56.0 3.21e-01 88.6% 57.8%
3bfmA02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 56.0 5.64e-01 95.5% 90.7%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.71 59.0 5.16e-01 100.0% 83.3%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 59.0 5.43e-01 100.0% 73.3%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.70 55.0 3.73e-01 90.9% 64.4%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.70 55.0 3.53e-01 90.9% 41.7%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 57.0 5.16e-01 100.0% 74.2%
4rmoA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.69 56.0 4.00e-01 100.0% 64.3%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.69 58.0 5.43e-01 100.0% 80.7%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 56.0 5.56e-01 100.0% 89.8%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 56.0 5.10e-01 100.0% 95.3%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.68 58.0 3.46e-01 100.0% 14.0%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 5.30e-01 100.0% 82.1%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.68 57.0 5.30e-01 100.0% 74.6%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.68 55.0 4.32e-01 100.0% 79.6%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 5.51e-01 100.0% 91.7%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 46.0 3.50e-01 72.7% 75.4%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.68 55.0 4.29e-01 100.0% 41.2%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 57.0 3.44e-01 100.0% 14.0%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.67 55.0 3.40e-01 97.7% 47.1%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.67 54.0 5.04e-01 100.0% 80.0%
2ywlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 53.0 3.59e-01 90.9% 57.6%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 54.0 5.13e-01 95.5% 98.2%
4paaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 52.0 3.29e-01 90.9% 54.7%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 54.0 5.00e-01 97.7% 91.7%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 54.0 4.84e-01 100.0% 82.4%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.66 51.0 3.52e-01 90.9% 62.8%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 52.0 4.85e-01 100.0% 90.5%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 53.0 5.20e-01 100.0% 98.0%
1hh2P02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 46.0 4.22e-01 79.5% 57.1%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 53.0 4.55e-01 100.0% 68.8%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 55.0 4.02e-01 100.0% 35.2%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 55.0 3.33e-01 100.0% 14.7%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 52.0 5.17e-01 97.7% 100.0%
1v5rA00 3.30.920.20 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Gas2-like domain 0.64 48.0 3.77e-01 95.5% 37.1%
1yt3A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 48.0 3.22e-01 86.4% 30.4%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.64 50.0 3.77e-01 100.0% 60.9%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.64 45.0 3.10e-01 79.5% 30.1%
1okeB02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.63 54.0 4.58e-01 100.0% 57.1%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 52.0 4.15e-01 100.0% 56.1%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 51.0 4.69e-01 95.5% 98.3%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 49.0 4.68e-01 100.0% 96.6%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.63 40.0 4.24e-01 88.6% 84.8%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 4.66e-01 100.0% 68.8%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 48.0 4.29e-01 100.0% 85.3%
2i2lA01 2.10.70.50 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.61 48.0 4.66e-01 95.5% 98.1%
7r3mA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 49.0 4.22e-01 100.0% 80.5%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 49.0 4.68e-01 100.0% 94.7%
2dlpA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 48.0 4.11e-01 100.0% 67.1%
2iz4A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.60 42.0 4.06e-01 72.7% 98.0%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 47.0 4.36e-01 100.0% 96.9%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 44.0 4.22e-01 88.6% 78.2%
3ey7A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 46.0 3.45e-01 95.5% 78.5%
4pbpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 2.91e-01 90.9% 43.2%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.55 46.0 4.13e-01 100.0% 76.9%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 42.0 3.14e-01 100.0% 50.8%
2o1uB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.52 41.0 2.81e-01 90.9% 38.8%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.50 35.0 2.53e-01 79.5% 35.9%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942297 4.11.1.3 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.80 65.0 4.91e-01 100.0% 37.2%
3976863 4.11.1.3 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.78 63.0 4.91e-01 100.0% 40.0%
4525683 4.11.1.3 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.78 63.0 4.74e-01 100.0% 35.6%
2772566 4.11.1.3 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.77 61.0 4.68e-01 100.0% 36.8%
3164374 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.75 61.0 5.99e-01 100.0% 92.0%
4516378 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.74 62.0 5.42e-01 100.0% 61.4%
4245466 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.74 62.0 5.99e-01 100.0% 86.0%
4116754 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.73 59.0 5.92e-01 100.0% 95.6%
4505797 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 60.0 5.45e-01 100.0% 78.5%
4627221 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.72 58.0 5.29e-01 100.0% 66.2%
4647213 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.72 55.0 5.68e-01 97.7% 100.0%
3715776 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 55.0 4.95e-01 95.5% 60.0%
4680376 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.71 59.0 5.58e-01 100.0% 78.2%
3305577 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.71 60.0 5.65e-01 100.0% 81.8%
4278911 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.71 56.0 5.45e-01 90.9% 90.0%
3354228 5.1.3.120 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Glyoxal_oxid_N 0.71 59.0 3.44e-01 95.5% 32.0%
3494944 220.4.1.0 beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.71 60.0 4.47e-01 100.0% 64.2%
4112791 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.71 55.0 5.40e-01 90.9% 92.0%
1482194 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.71 59.0 5.43e-01 100.0% 73.3%
None 0.71 56.0 3.52e-01 90.9% 62.9%
3648711 5.1.3.120 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Glyoxal_oxid_N 0.71 59.0 3.37e-01 95.5% 28.1%
2575643 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.71 60.0 5.26e-01 100.0% 68.1%
4429179 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.70 56.0 5.64e-01 100.0% 93.3%
5045214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 57.0 5.08e-01 100.0% 78.6%
5980 227.1.1.9 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_PPF 0.70 55.0 4.21e-01 90.9% 86.4%
3628460 3308.1.1.0 beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › periplasmic lysozyme inhibitor of I-type lysozyme › periplasmic lysozyme inhibitor of I-type lysozyme 0.69 52.0 4.34e-01 84.1% 96.2%
3684619 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.69 61.0 3.50e-01 100.0% 11.4%
3756676 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.69 57.0 4.49e-01 100.0% 64.0%
3903430 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.69 52.0 4.32e-01 86.4% 65.9%
3929784 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.44e-01 95.5% 98.0%
3797486 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.07e-01 100.0% 67.7%
3457984 59.1.2.4 beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › Leo1 0.68 50.0 3.79e-01 84.1% 72.9%
4385345 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.68 56.0 5.46e-01 100.0% 88.0%
4679015 220.1.1.150 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.68 52.0 4.49e-01 93.2% 60.0%
4058919 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.67 54.0 5.33e-01 100.0% 86.0%
3933788 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 57.0 5.22e-01 100.0% 85.0%
4327598 59.1.1.10 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 0.67 51.0 3.79e-01 86.4% 70.8%
4053957 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.67 55.0 5.36e-01 100.0% 88.0%
4959077 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 55.0 5.01e-01 100.0% 95.3%
4065466 220.1.1.150 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.66 51.0 4.41e-01 93.2% 63.7%
3263180 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 53.0 4.11e-01 95.5% 55.5%
540 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.66 55.0 5.44e-01 100.0% 93.8%
3172837 59.1.1.10 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 0.66 50.0 3.66e-01 86.4% 91.5%
4931822 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 55.0 4.96e-01 100.0% 73.8%
4170351 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.66 53.0 4.62e-01 100.0% 57.3%
3179172 59.1.1.10 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 0.66 51.0 3.67e-01 88.6% 90.4%
3608005 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.66 55.0 3.26e-01 100.0% 12.8%
3931418 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.04e-01 100.0% 93.3%
3500448 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 54.0 4.89e-01 100.0% 76.9%
3991244 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.65 53.0 5.31e-01 100.0% 97.8%
3236014 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.65 54.0 3.22e-01 100.0% 12.9%
4432330 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.65 52.0 5.15e-01 100.0% 88.0%
158911 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 51.0 4.21e-01 100.0% 67.0%
4937731 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 49.0 4.71e-01 100.0% 85.0%
3391277 59.1.1.10 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 0.64 48.0 4.05e-01 86.4% 95.0%
4629529 2002.1.1.420 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI, PF25918 0.64 52.0 3.00e-01 93.2% 22.1%
3519861 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 52.0 4.81e-01 100.0% 85.0%
3606151 59.1.1.10 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 0.63 48.0 3.57e-01 88.6% 90.8%
3242479 2484.1.1.190 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.62 49.0 3.12e-01 100.0% 19.6%
3224579 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.62 49.0 3.06e-01 100.0% 17.2%
3740679 59.1.1.10 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 0.62 51.0 3.73e-01 97.7% 91.1%
4212008 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.62 46.0 2.81e-01 81.8% 19.7%
3788010 59.1.1.10 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 0.62 45.0 3.70e-01 84.1% 89.5%
3778124 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 50.0 4.55e-01 100.0% 84.6%
3701268 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.62 51.0 3.04e-01 100.0% 11.9%
3523046 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 49.0 4.15e-01 100.0% 61.2%
3623786 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 48.0 4.44e-01 100.0% 83.1%
3388829 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 49.0 2.86e-01 100.0% 10.5%
4162022 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.57 46.0 3.89e-01 95.5% 83.7%