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NC_070764.1__YP_010649209.1__PP304_gp158__00165

Bact-Vir

Identity

Accession:: NC_070764 ↗
Kingdom:: phage

Quality

72.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Godonkavirus› Gordonia_phage_Phendrix

TaxID: 2593335

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-103

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1vq0A02	3.90.1280.10	Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like	0.68	40.0	4.89e-01	74.7%	94.7%
6kxkB02	2.60.40.150	Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain	0.64	46.0	4.08e-01	75.8%	81.5%
1rypD00	3.60.20.10	Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain	0.59	40.0	2.97e-01	71.4%	26.6%
2jmlA00	1.10.1660.10	Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 ›	0.59	35.0	3.71e-01	93.4%	66.7%
2yztA00	3.30.160.250	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.58	38.0	4.28e-01	78.0%	92.4%
1kkhA01	3.30.230.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 ›	0.55	38.0	3.07e-01	72.5%	53.0%
1xjkA00	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.53	44.0	2.71e-01	92.3%	73.6%
5ly3A02	3.30.420.570	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 ›	0.53	45.0	3.46e-01	95.6%	45.5%
7qzqA01	2.120.10.80	Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller	0.52	44.0	3.11e-01	97.8%	83.8%
1vw5A00	3.30.70.1420	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Structure from the mobile metagenome of cole harbour salt marsh: integron cassette protein hfx_cass1	0.52	44.0	3.79e-01	96.7%	92.7%
2v3uA01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.51	35.0	3.10e-01	73.6%	93.9%
1tueD00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.50	38.0	2.96e-01	80.2%	45.5%
3lxrF00	1.10.4120.20	Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold ›	0.50	42.0	3.45e-01	95.6%	92.8%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4994957	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.77	34.0	4.37e-01	93.4%	70.9%
4931448	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.72	40.0	5.22e-01	87.9%	100.0%
4940485	295.1.1.0 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain	0.58	45.0	4.16e-01	86.8%	84.0%
4962256	101.1.2.937 ↗	alpha arrays › HTH › HTH › winged helix domain › PF25943	0.57	39.0	3.71e-01	72.5%	59.1%
3235840	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.56	43.0	4.23e-01	81.3%	89.0%
3941006	212.1.1.3 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N	0.56	39.0	3.03e-01	73.6%	60.9%
3928962	4161.1.1.2 ↗	beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC_N	0.51	35.0	3.04e-01	71.4%	52.0%
3710532	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.51	36.0	3.42e-01	72.5%	81.9%
1714462	1021.1.1.0 ↗	a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases	0.51	39.0	3.96e-01	86.8%	84.3%
4976557	101.1.2.21 ↗	alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress	0.50	44.0	3.60e-01	96.7%	59.5%