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NC_070765.1__YP_010649251.1__PP339_gp002__00002

Bact-Vir

NC_070765.1__YP_010649251.1__PP339_gp002__00002

Identity

Accession:
NC_070765 ↗
Kingdom:
phage

Quality

74.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-70
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.75 51.0 5.49e-01 94.3% 84.7%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 59.0 5.01e-01 85.7% 58.7%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 44.0 4.50e-01 77.1% 65.7%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 53.0 4.94e-01 85.7% 69.8%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.66 44.0 3.99e-01 87.1% 50.5%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 40.0 4.18e-01 98.6% 66.2%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.65 53.0 4.31e-01 90.0% 88.0%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 47.0 4.91e-01 97.1% 87.3%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.63 55.0 4.23e-01 100.0% 42.9%
3i6eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 43.0 3.81e-01 71.4% 89.3%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.62 30.0 2.65e-01 78.6% 28.7%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 48.0 4.24e-01 85.7% 72.2%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 42.0 3.54e-01 71.4% 82.4%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 37.0 4.00e-01 88.6% 71.7%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 4.23e-01 97.1% 71.8%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 37.0 3.89e-01 85.7% 70.5%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 42.0 4.34e-01 90.0% 79.1%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.10e-01 97.1% 70.8%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 4.25e-01 97.1% 82.3%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.88e-01 87.1% 63.2%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.57 43.0 3.54e-01 84.3% 75.7%
1q47A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 49.0 3.00e-01 100.0% 25.2%
3fcyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 39.0 2.55e-01 71.4% 50.5%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.57 43.0 3.62e-01 82.9% 78.9%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.56 44.0 3.55e-01 88.6% 54.7%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 41.0 3.06e-01 80.0% 95.3%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 37.0 4.06e-01 77.1% 87.5%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.56 48.0 3.94e-01 100.0% 75.0%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 42.0 4.27e-01 90.0% 83.1%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 44.0 3.36e-01 87.1% 85.7%
7tzoA01 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.55 43.0 3.33e-01 88.6% 37.4%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.55 47.0 4.15e-01 98.6% 88.0%
1avgI00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 46.0 3.76e-01 100.0% 75.4%
3ua3A03 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.53 40.0 3.04e-01 87.1% 93.6%
5aigA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 46.0 3.87e-01 100.0% 84.7%
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 42.0 4.20e-01 98.6% 83.8%
1c8zA00 3.20.90.10 Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A 0.52 39.0 2.69e-01 81.4% 92.5%
6qm7A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 46.0 3.18e-01 100.0% 57.8%
3iayA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 38.0 3.42e-01 78.6% 85.7%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.51 44.0 3.86e-01 98.6% 88.9%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 41.0 3.33e-01 85.7% 92.3%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 3.50e-01 100.0% 59.7%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.25e-01 82.9% 80.6%
2xzmE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 39.0 3.36e-01 84.3% 90.5%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 2.83e-01 100.0% 20.7%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 40.0 4.05e-01 95.7% 90.1%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.51 40.0 3.48e-01 88.6% 74.6%
4glaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 36.0 3.43e-01 77.1% 89.9%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3234621 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.77 62.0 4.89e-01 85.7% 47.4%
4930437 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.76 59.0 5.10e-01 82.9% 61.9%
3265211 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 57.0 4.71e-01 84.3% 56.0%
4964699 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.73 56.0 4.99e-01 82.9% 65.0%
5031992 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.73 49.0 3.75e-01 70.0% 53.5%
3520868 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 57.0 4.52e-01 84.3% 66.4%
4949986 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.70 58.0 4.95e-01 90.0% 62.7%
5007104 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.70 55.0 4.80e-01 85.7% 61.9%
3312151 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 55.0 4.24e-01 85.7% 46.5%
5025053 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 56.0 4.42e-01 85.7% 54.8%
4296071 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 55.0 4.15e-01 87.1% 63.5%
4968862 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 44.0 5.07e-01 81.4% 100.0%
3952939 220.1.1.82 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.69 55.0 5.43e-01 87.1% 89.3%
5076310 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.68 46.0 3.54e-01 70.0% 53.5%
4956582 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 51.0 4.33e-01 87.1% 68.8%
3572707 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 52.0 4.32e-01 85.7% 56.0%
3993317 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 47.0 4.71e-01 74.3% 75.7%
3958768 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 52.0 5.03e-01 87.1% 83.7%
3926852 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 52.0 4.18e-01 87.1% 65.7%
5048974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 52.0 4.52e-01 100.0% 56.4%
3941521 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.65 43.0 3.64e-01 87.1% 42.5%
5064060 896.1.1.4 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DDE_Tnp_IS66 0.65 46.0 4.62e-01 75.7% 82.9%
3572103 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.64 50.0 4.14e-01 88.6% 73.3%
3430888 244.1.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.64 50.0 3.05e-01 88.6% 95.1%
4983389 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.63 37.0 3.89e-01 72.9% 63.1%
344114 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.62 43.0 3.56e-01 71.4% 83.1%
3690224 5.1.3.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.61 53.0 3.31e-01 100.0% 29.5%
4971602 316.1.1.45 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF4269 0.61 41.0 3.29e-01 70.0% 56.1%
3711062 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 47.0 4.23e-01 85.7% 66.0%
3973947 3454.1.1.0 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.60 37.0 3.72e-01 88.6% 61.4%
4988107 283.2.1.9 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Sheath_initiator 0.60 43.0 3.75e-01 85.7% 49.1%
4483150 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 43.0 3.43e-01 80.0% 79.4%
3282644 2.24.1.2 beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF7489 0.59 42.0 4.33e-01 77.1% 95.4%
3700747 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.67e-01 100.0% 92.2%
5000724 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 41.0 3.80e-01 75.7% 89.5%
3943027 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 40.0 4.01e-01 74.3% 94.7%
3781083 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.58 51.0 3.08e-01 100.0% 43.5%
3234869 206.1.1.44 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 0.58 51.0 3.17e-01 98.6% 33.9%
3980078 274.1.1.24 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSppdC 0.58 35.0 3.50e-01 90.0% 60.0%
3626173 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 46.0 3.09e-01 92.9% 38.8%
3484671 3433.1.1.0 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.58 36.0 4.14e-01 88.6% 88.0%
4493573 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.58 46.0 3.47e-01 92.9% 51.0%
4103142 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.57 42.0 4.07e-01 81.4% 70.0%
4107647 243.18.1.1 a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain › Mak_N_cap 0.57 49.0 4.43e-01 94.3% 93.7%
3212636 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.57 50.0 2.94e-01 98.6% 18.9%
3680747 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 47.0 2.96e-01 92.9% 65.2%
5037155 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 50.0 3.06e-01 100.0% 83.7%
4024970 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 43.0 2.72e-01 87.1% 20.5%
3811281 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 39.0 3.75e-01 74.3% 76.5%
4534466 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.56 38.0 3.45e-01 70.0% 56.8%
3619246 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 48.0 4.26e-01 98.6% 69.5%
3720213 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 48.0 3.03e-01 100.0% 35.8%
3596021 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 48.0 2.99e-01 100.0% 35.5%
3257603 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 37.0 3.17e-01 70.0% 70.0%
3935989 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.87e-01 92.9% 35.5%
4990951 3535.1.1.0 a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 0.54 46.0 3.84e-01 100.0% 78.5%
3787501 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 37.0 2.99e-01 71.4% 95.7%
3645375 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.54 40.0 3.73e-01 82.9% 87.2%
4087213 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.54 43.0 4.22e-01 100.0% 82.7%
4237498 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.53 43.0 3.70e-01 100.0% 52.8%
5045871 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.53 36.0 3.67e-01 72.9% 95.7%
3658595 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.53 38.0 3.90e-01 78.6% 92.9%
3730082 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.53 44.0 3.01e-01 98.6% 45.5%
4213053 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 3.73e-01 85.7% 89.5%
3307236 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 41.0 3.51e-01 87.1% 51.7%
5004264 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.52 45.0 3.79e-01 100.0% 57.7%
3366703 2.1.1.157 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB2 0.52 39.0 3.25e-01 84.3% 80.0%
4382028 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 29.0 3.67e-01 88.6% 97.5%
3166240 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 36.0 3.76e-01 74.3% 86.7%
4847869 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.52 45.0 3.20e-01 100.0% 73.9%
3390184 206.1.1.55 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.51 43.0 2.80e-01 100.0% 32.3%
3258217 3459.1.1.0 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.51 35.0 3.58e-01 72.9% 94.3%
3368743 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.50 35.0 3.72e-01 74.3% 95.0%