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NC_070765.1__YP_010649352.1__PP339_gp103__00103
Bact-VirNC_070765.1__YP_010649352.1__PP339_gp103__00103
Identity
- Accession:
- NC_070765 ↗
- Kingdom:
- phage
Quality
70.1
mean pLDDT
Taxonomy
TaxID: 2686235
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-38
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4e80C01 | 1.10.1410.10 | Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › | 0.87 | 59.0 | 3.58e-01 | 100.0% | 12.1% |
| 5yk4A04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.80 | 55.0 | 3.59e-01 | 100.0% | 19.1% |
| 4ad9A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 52.0 | 3.98e-01 | 97.2% | 32.1% |
| 3tvkA00 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.71 | 52.0 | 3.42e-01 | 100.0% | 17.4% |
| 1vyiA00 | 1.20.120.820 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphoprotein, C-terminal domain | 0.71 | 62.0 | 4.44e-01 | 100.0% | 36.9% |
| 5c9iD01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.70 | 54.0 | 3.44e-01 | 100.0% | 18.6% |
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.69 | 54.0 | 4.64e-01 | 97.2% | 62.1% |
| 1xttB00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.66 | 52.0 | 3.33e-01 | 94.4% | 20.7% |
| 3u6uC00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.66 | 55.0 | 3.22e-01 | 91.7% | 29.7% |
| 2v79A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 47.0 | 3.28e-01 | 77.8% | 57.4% |
| 6ks6Z01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.65 | 48.0 | 2.94e-01 | 88.9% | 82.2% |
| 1cp9A01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.63 | 52.0 | 3.45e-01 | 91.7% | 67.8% |
| 2greA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.63 | 53.0 | 3.16e-01 | 91.7% | 66.1% |
| 6b4rA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.62 | 54.0 | 3.17e-01 | 97.2% | 15.2% |
| 6ks6q01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.62 | 53.0 | 3.19e-01 | 100.0% | 44.7% |
| 3l50A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.62 | 41.0 | 2.84e-01 | 77.8% | 16.2% |
| 2iq1A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.60 | 51.0 | 3.02e-01 | 97.2% | 43.2% |
| 1c0gA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.59 | 41.0 | 3.12e-01 | 75.0% | 33.7% |
| 1c7uA01 | 3.40.1810.10 | Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box | 0.59 | 50.0 | 4.21e-01 | 100.0% | 71.4% |
| 1n40A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.58 | 50.0 | 2.83e-01 | 100.0% | 34.8% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.58 | 50.0 | 3.86e-01 | 97.2% | 44.9% |
| 5gxuB01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 44.0 | 3.14e-01 | 91.7% | 37.7% |
| 2p5kA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 43.0 | 3.64e-01 | 86.1% | 95.2% |
| 2xnjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 42.0 | 3.22e-01 | 94.4% | 54.8% |
| 3icyA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 36.0 | 2.74e-01 | 97.2% | 22.9% |
| 6nvxB02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.54 | 43.0 | 3.50e-01 | 97.2% | 51.9% |
| 2z3gB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.54 | 44.0 | 3.05e-01 | 94.4% | 61.4% |
| 5b3hC01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 36.0 | 3.43e-01 | 83.3% | 54.2% |
| 4wksC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.51 | 41.0 | 3.37e-01 | 97.2% | 56.0% |
| 3e07A00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.51 | 36.0 | 2.76e-01 | 77.8% | 65.6% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3610966 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.84 | 59.0 | 3.45e-01 | 75.0% | 11.1% |
| 4325826 | 225.1.1.27 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › PF26329 | 0.83 | 57.0 | 3.33e-01 | 94.4% | 10.0% |
| 3735991 | 109.4.1.526 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc | 0.82 | 56.0 | 3.02e-01 | 100.0% | 4.2% |
| 4936469 | 7581.1.1.1 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N | 0.81 | 55.0 | 3.22e-01 | 100.0% | 8.9% |
| 3985490 | 192.2.1.5 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 | 0.80 | 56.0 | 3.77e-01 | 100.0% | 21.8% |
| 3213954 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.80 | 54.0 | 3.32e-01 | 100.0% | 13.2% |
| 3178155 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.78 | 56.0 | 3.34e-01 | 77.8% | 15.9% |
| 3687833 | 5073.1.1.18 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Hydrolase | 0.78 | 64.0 | 3.44e-01 | 88.9% | 5.3% |
| 3723045 | 304.51.1.18 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › PF28298 | 0.77 | 60.0 | 4.28e-01 | 83.3% | 50.0% |
| 3429600 | 101.21.1.1 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N | 0.77 | 54.0 | 3.61e-01 | 100.0% | 20.8% |
| 3981752 | 829.1.1.1 ↗ | a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB | 0.77 | 54.0 | 3.70e-01 | 100.0% | 20.8% |
| 3795771 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.77 | 55.0 | 3.12e-01 | 77.8% | 7.3% |
| 3292448 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.76 | 53.0 | 3.28e-01 | 75.0% | 14.6% |
| 4527101 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.76 | 68.0 | 4.37e-01 | 100.0% | 36.3% |
| 4011414 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.76 | 57.0 | 3.46e-01 | 80.6% | 57.7% |
| 3681746 | 328.7.1.0 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain | 0.75 | 52.0 | 3.83e-01 | 100.0% | 28.9% |
| 3926333 | 5054.1.1.59 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 | 0.72 | 59.0 | 3.33e-01 | 88.9% | 80.0% |
| 3457593 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.71 | 59.0 | 4.26e-01 | 94.4% | 35.0% |
| 3620102 | 5067.1.1.3 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched | 0.71 | 60.0 | 3.19e-01 | 97.2% | 23.5% |
| 3538243 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.70 | 58.0 | 4.64e-01 | 100.0% | 46.3% |
| 4944834 | 3625.1.1.0 ↗ | alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain | 0.69 | 52.0 | 3.76e-01 | 97.2% | 28.2% |
| 4970833 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.68 | 42.0 | 3.36e-01 | 91.7% | 30.0% |
| 3711143 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 61.0 | 3.48e-01 | 100.0% | 66.7% |
| 2966548 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.67 | 46.0 | 2.96e-01 | 97.2% | 14.2% |
| 3834208 | 2004.5.1.3 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN | 0.67 | 58.0 | 3.48e-01 | 97.2% | 32.9% |
| 3519143 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.67 | 58.0 | 3.42e-01 | 100.0% | 13.1% |
| 3520913 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.66 | 56.0 | 3.10e-01 | 100.0% | 19.0% |
| 3740646 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.65 | 57.0 | 4.47e-01 | 100.0% | 45.0% |
| 4025072 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.65 | 58.0 | 4.00e-01 | 100.0% | 70.4% |
| 4033043 | 616.1.1.41 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 | 0.65 | 57.0 | 4.22e-01 | 97.2% | 42.2% |
| 3970671 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.65 | 58.0 | 4.47e-01 | 97.2% | 64.0% |
| 3923920 | 148.1.1.8 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TFIID_30kDa | 0.65 | 56.0 | 4.10e-01 | 97.2% | 41.9% |
| 3715885 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.65 | 48.0 | 3.19e-01 | 97.2% | 20.7% |
| 3621931 | 109.4.1.143 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ric8 | 0.65 | 57.0 | 3.10e-01 | 97.2% | 14.0% |
| 3783976 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.65 | 54.0 | 4.15e-01 | 100.0% | 82.2% |
| 3974474 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.64 | 57.0 | 4.13e-01 | 97.2% | 53.3% |
| 3273185 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.63 | 56.0 | 3.06e-01 | 97.2% | 8.9% |
| 3947139 | 2003.1.2.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 | 0.63 | 53.0 | 3.06e-01 | 94.4% | 79.1% |
| 3615606 | 3447.1.1.1 ↗ | alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › ERG4_ERG24 | 0.63 | 51.0 | 3.25e-01 | 97.2% | 21.7% |
| 3585434 | 109.4.1.2720 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Peptidase_M17 | 0.61 | 54.0 | 3.00e-01 | 100.0% | 23.7% |
| 3966249 | 4958.1.1.0 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit | 0.61 | 55.0 | 3.54e-01 | 100.0% | 23.2% |
| 3686916 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.60 | 45.0 | 2.84e-01 | 86.1% | 63.7% |
| 3176551 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.60 | 46.0 | 3.22e-01 | 91.7% | 37.1% |
| 4022855 | 304.117.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › PF28298 | 0.59 | 53.0 | 3.99e-01 | 100.0% | 69.4% |
| 3937789 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.59 | 47.0 | 3.18e-01 | 94.4% | 74.5% |
| 4945161 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.58 | 40.0 | 2.58e-01 | 75.0% | 16.3% |
| 3175261 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 39.0 | 3.43e-01 | 72.2% | 41.8% |
| 3668417 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.55 | 38.0 | 2.77e-01 | 75.0% | 50.8% |
| 3742496 | 2006.1.6.19 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › IML1 | 0.54 | 42.0 | 2.73e-01 | 100.0% | 15.7% |
| 3699192 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.53 | 40.0 | 2.44e-01 | 83.3% | 41.1% |