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NC_070766.1__YP_010649369.1__PP340_gp13__00013

Bact-Vir

NC_070766.1__YP_010649369.1__PP340_gp13__00013

Identity

Accession:
NC_070766 ↗
Kingdom:
phage

Quality

61.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Adaiavirus› Arthrobacter_phage_Adaia

TaxID: 2419945

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-133
PDB
Domain cluster: rep: NC_021791.1__YP_008241037.1__Phi12-1_gp58__00058__D3-129
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.77 50.0 4.58e-01 82.0% 51.2%
1o0vA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 36.0 3.91e-01 76.6% 65.5%
1s3rA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.62 23.0 3.62e-01 75.0% 84.9%
3kojB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 25.0 2.92e-01 78.9% 54.4%
2joeA01 3.30.1830.10 Alpha Beta › 2-Layer Sandwich › YehR-like fold › YehR-like 0.57 36.0 3.68e-01 95.3% 64.1%
1twfB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.54 37.0 3.84e-01 71.9% 93.5%
2pmzB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.52 37.0 3.75e-01 71.9% 93.5%
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.51 27.0 2.92e-01 95.3% 58.9%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.50 33.0 3.37e-01 75.8% 67.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3948350 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.71 53.0 6.01e-01 84.4% 100.0%
4962710 295.1.1.54 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF6360 0.58 28.0 3.32e-01 93.0% 64.7%
3764712 11.1.1.118 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Adhes-Ig_like 0.53 34.0 3.47e-01 77.3% 63.1%
D2 medium residues 196-271_315-406
PDB