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NC_070767.1__YP_010649394.1__PP342_gp10__00010

Bact-Vir

NC_070767.1__YP_010649394.1__PP342_gp10__00010

Identity

Accession:
NC_070767 ↗
Kingdom:
phage

Quality

87.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-83
PDB
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.61 37.0 3.73e-01 100.0% 60.5%
3d2fA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.61 45.0 4.38e-01 85.7% 71.4%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.59 31.0 3.43e-01 97.4% 62.3%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 46.0 3.33e-01 88.3% 66.1%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 49.0 4.73e-01 97.4% 83.9%
4yosA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 44.0 3.51e-01 83.1% 89.4%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 37.0 3.94e-01 100.0% 77.9%
3kzhB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 45.0 3.09e-01 94.8% 27.1%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 34.0 3.92e-01 96.1% 100.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5025086 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.64 44.0 4.99e-01 100.0% 98.2%
4260414 2484.1.1.6 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.62 51.0 3.63e-01 92.2% 65.6%
3741565 377.1.1.4 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › GATA 0.57 37.0 3.09e-01 72.7% 39.8%
4061279 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 34.0 3.80e-01 100.0% 83.6%
3503474 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.51 43.0 3.14e-01 100.0% 34.9%