Back to structures

NC_070769.1__YP_010649539.1__PP356_gp57__00057

Bact-Vir

NC_070769.1__YP_010649539.1__PP356_gp57__00057

Identity

Accession:
NC_070769 ↗
Kingdom:
phage

Quality

94.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-87
PDB
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 65.0 5.83e-01 97.3% 83.5%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 58.0 5.67e-01 83.6% 92.4%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 59.0 5.60e-01 86.3% 83.5%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 62.0 5.80e-01 94.5% 96.7%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 56.0 5.26e-01 82.2% 79.1%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 61.0 5.77e-01 95.9% 89.8%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 56.0 5.64e-01 86.3% 93.1%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 52.0 5.05e-01 80.8% 86.3%
3cuqC01 1.10.10.570 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1" 0.68 53.0 4.84e-01 83.6% 73.5%
4mqvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 5.55e-01 86.3% 100.0%
5tjjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 5.12e-01 83.6% 91.8%
2j5oA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 5.47e-01 83.6% 93.8%
1d8jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 5.09e-01 86.3% 90.1%
3r4kB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 50.0 5.34e-01 82.2% 96.8%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 5.14e-01 84.9% 97.3%
3s2wG00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 56.0 4.58e-01 95.9% 51.1%
2l4mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 5.50e-01 95.9% 95.7%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 58.0 5.29e-01 100.0% 79.6%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 5.23e-01 80.8% 100.0%
3jw4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 4.47e-01 95.9% 53.3%
5w3gA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.26e-01 82.2% 82.7%
3zriA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.63 51.0 4.00e-01 87.7% 85.1%
2qlzA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 4.91e-01 79.5% 96.8%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.03e-01 86.3% 45.4%
3f6oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 54.0 5.02e-01 95.9% 81.3%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.11e-01 80.8% 58.7%
4p9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.77e-01 80.8% 94.0%
3c7jA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.39e-01 83.6% 70.3%
1eqnB01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.60 46.0 3.99e-01 86.3% 85.7%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.59 46.0 4.73e-01 86.3% 100.0%
2vxzA02 1.10.10.1490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 45.0 4.29e-01 87.7% 95.4%
1jvaB02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 49.0 4.35e-01 100.0% 72.7%
2f33A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 42.0 4.05e-01 84.9% 81.6%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.54 38.0 3.79e-01 74.0% 85.3%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.54 41.0 3.88e-01 87.7% 87.2%
4bndA02 3.30.1240.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain 0.51 37.0 3.40e-01 78.1% 93.8%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3962010 101.1.2.863 alpha arrays › HTH › HTH › winged helix domain › AbiEi_1 0.84 57.0 4.86e-01 75.3% 46.4%
5047951 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 72.0 5.23e-01 100.0% 58.9%
3486417 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 57.0 6.26e-01 82.2% 93.3%
4942687 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 63.0 6.14e-01 86.3% 88.7%
3375185 101.1.2.462 alpha arrays › HTH › HTH › winged helix domain › DUF7647 0.78 60.0 5.00e-01 80.8% 89.8%
3450793 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.78 71.0 5.66e-01 100.0% 63.6%
3853256 101.1.2.161 alpha arrays › HTH › HTH › winged helix domain › NOD2_WH 0.78 62.0 6.50e-01 84.9% 100.0%
4173782 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.77 67.0 5.76e-01 95.9% 80.0%
3428027 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.77 70.0 5.67e-01 100.0% 66.7%
4602598 101.1.2.147 alpha arrays › HTH › HTH › winged helix domain › ORC4_C 0.77 68.0 5.64e-01 97.3% 76.8%
3433965 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.76 70.0 5.54e-01 100.0% 69.3%
4961972 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 65.0 6.37e-01 95.9% 86.3%
4990967 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 60.0 4.56e-01 87.7% 59.4%
3441899 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.75 61.0 5.92e-01 87.7% 96.2%
3625612 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.75 67.0 6.04e-01 100.0% 90.0%
3289632 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 57.0 6.01e-01 86.3% 92.3%
3315625 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 67.0 5.20e-01 100.0% 58.1%
3275517 101.1.2.199 alpha arrays › HTH › HTH › winged helix domain › FAN1_HTH 0.73 66.0 4.89e-01 100.0% 50.3%
3878117 101.1.2.161 alpha arrays › HTH › HTH › winged helix domain › NOD2_WH 0.73 62.0 5.88e-01 93.2% 100.0%
5041057 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 65.0 5.95e-01 100.0% 91.6%
3371197 207.1.1.214 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8, LRR_RPS2, LRR_14 0.73 66.0 3.84e-01 100.0% 15.3%
3297063 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 65.0 5.87e-01 100.0% 87.0%
5083444 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 65.0 6.06e-01 100.0% 81.1%
4995404 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 59.0 5.75e-01 90.4% 91.3%
5016955 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 63.0 5.52e-01 97.3% 86.4%
3941890 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 55.0 5.61e-01 80.8% 94.3%
5044560 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 63.0 4.46e-01 100.0% 81.3%
3962226 101.1.2.104 alpha arrays › HTH › HTH › winged helix domain › SelB-wing_3 0.72 61.0 5.11e-01 94.5% 55.2%
5017954 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 55.0 5.59e-01 83.6% 85.7%
3851347 101.1.2.235 alpha arrays › HTH › HTH › winged helix domain › Nlrc4-like_WHD 0.71 60.0 6.13e-01 91.8% 100.0%
4017936 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 64.0 5.87e-01 100.0% 90.5%
3597746 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.71 53.0 5.14e-01 79.5% 87.5%
3702650 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.71 55.0 5.01e-01 82.2% 76.6%
4973736 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 5.49e-01 83.6% 92.0%
3360648 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 63.0 5.02e-01 100.0% 58.6%
1519214 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.70 63.0 5.61e-01 100.0% 92.2%
5061575 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 61.0 5.58e-01 100.0% 84.0%
4537424 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 61.0 5.62e-01 100.0% 92.6%
5056322 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 60.0 5.61e-01 95.9% 94.4%
4017591 101.1.2.520 alpha arrays › HTH › HTH › winged helix domain › DUF7779 0.69 62.0 6.02e-01 98.6% 90.0%
3739748 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 61.0 5.83e-01 100.0% 90.6%
4019967 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 60.0 5.38e-01 100.0% 89.5%
4970622 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 56.0 5.25e-01 91.8% 83.3%
4039619 101.1.2.2 alpha arrays › HTH › HTH › winged helix domain › Ets 0.67 51.0 4.46e-01 83.6% 78.3%
3727981 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 59.0 4.64e-01 100.0% 63.2%
3597290 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 4.94e-01 97.3% 98.2%
4523809 101.1.2.281 alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.67 58.0 4.42e-01 100.0% 42.8%
3730487 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 59.0 4.72e-01 100.0% 74.5%
3648382 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 59.0 4.36e-01 100.0% 59.5%
5031515 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.66 57.0 5.26e-01 95.9% 83.2%
3427551 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 58.0 5.07e-01 100.0% 76.4%
3525057 101.1.2.304 alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase 0.65 50.0 5.30e-01 84.9% 100.0%
3283273 101.1.2.112 alpha arrays › HTH › HTH › winged helix domain › FtsK_gamma 0.65 51.0 4.97e-01 84.9% 77.5%
3991612 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 4.05e-01 100.0% 34.5%
5046943 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.65 55.0 4.31e-01 95.9% 45.0%
5006819 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.64 55.0 5.07e-01 97.3% 77.9%
3505215 101.1.2.281 alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.63 54.0 4.54e-01 100.0% 57.0%
2506903 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 56.0 4.92e-01 100.0% 83.5%
5073681 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 4.66e-01 95.9% 62.6%
5055611 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 4.15e-01 100.0% 53.3%
4586962 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.62 47.0 4.08e-01 83.6% 69.2%
4028213 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 54.0 4.44e-01 100.0% 61.5%
3653215 101.1.1.28 alpha arrays › HTH › HTH › Three-helical HTH › SWIRM 0.60 52.0 4.78e-01 100.0% 79.0%
3662506 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.59 42.0 2.97e-01 76.7% 84.8%
1033426 320.4.1.3 a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB 0.58 49.0 4.26e-01 100.0% 70.2%
5000181 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.58 44.0 3.93e-01 100.0% 56.4%
3705127 509.1.1.0 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.57 46.0 4.24e-01 87.7% 94.7%
3575 4084.1.1.1 alpha bundles › ChaB-like › ChaB-like › ChaB-like › ChaB 0.54 38.0 3.79e-01 74.0% 85.3%
3832037 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 41.0 2.85e-01 87.7% 54.3%
3786841 101.1.2.392 alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.53 39.0 3.61e-01 84.9% 85.7%
D2 medium residues 92-130
PDB
Domain cluster: representative