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NC_070771.1__YP_010649683.1__PP358_gp63__00063

Bact-Vir

NC_070771.1__YP_010649683.1__PP358_gp63__00063

Identity

Accession:
NC_070771 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shoyavirus› Arthrobacter_phage_Shoya

TaxID: 2704035

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-41
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ctfA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.90 77.0 6.33e-01 94.9% 100.0%
7agpA01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.82 66.0 5.73e-01 92.3% 100.0%
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.80 66.0 5.55e-01 100.0% 97.2%
3tzyA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.78 68.0 5.62e-01 100.0% 88.6%
4qbuA03 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.77 65.0 5.58e-01 100.0% 100.0%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.77 64.0 5.41e-01 100.0% 57.7%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.76 63.0 5.10e-01 100.0% 89.0%
3t34A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.74 63.0 3.67e-01 100.0% 13.7%
7npaA02 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 57.0 4.61e-01 94.9% 84.7%
6lxgA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.69 53.0 4.50e-01 89.7% 100.0%
6ztgA01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.68 54.0 4.62e-01 100.0% 100.0%
2gm2A01 3.40.1230.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like 0.68 57.0 4.15e-01 100.0% 65.2%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 51.0 4.34e-01 100.0% 92.9%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.67 53.0 4.17e-01 100.0% 40.0%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.67 55.0 4.55e-01 100.0% 79.7%
4h7lB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 48.0 3.52e-01 100.0% 27.4%
4ggmX02 3.40.140.80 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › LpxI C-terminal catalytic domain 0.66 54.0 3.73e-01 100.0% 31.3%
4ezeB00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.66 54.0 3.25e-01 100.0% 26.3%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 50.0 3.53e-01 100.0% 24.2%
1rhfA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 53.0 4.21e-01 100.0% 43.5%
5vmzA03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.65 54.0 5.45e-01 100.0% 97.5%
1pqsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.65 50.0 4.27e-01 100.0% 50.6%
4x9xA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 47.0 3.22e-01 82.1% 86.6%
4d05A01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.64 55.0 4.55e-01 100.0% 53.9%
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.63 49.0 3.70e-01 100.0% 93.4%
3qfhC02 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.62 49.0 2.89e-01 94.9% 30.7%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.62 48.0 3.45e-01 100.0% 28.4%
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 54.0 4.19e-01 100.0% 92.9%
1pzxA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.61 48.0 5.00e-01 97.4% 100.0%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.60 48.0 3.41e-01 100.0% 52.5%
2bc4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 3.62e-01 100.0% 44.0%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 3.69e-01 100.0% 50.5%
3pl5A02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.58 44.0 4.51e-01 97.4% 100.0%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.58 47.0 3.42e-01 92.3% 93.8%
3oq3B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 3.72e-01 100.0% 43.0%
2cryA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 3.60e-01 100.0% 52.0%
1jbjA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 3.91e-01 100.0% 52.0%
3rbsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 3.74e-01 100.0% 50.0%
3fysA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 43.0 3.09e-01 100.0% 24.8%
2j8bA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.57 42.0 3.71e-01 100.0% 56.4%
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.57 47.0 3.38e-01 100.0% 67.2%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 42.0 3.07e-01 100.0% 89.0%
2a90A02 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.56 43.0 3.91e-01 94.9% 100.0%
4igbB02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 3.23e-01 100.0% 33.6%
2eo1A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.45e-01 100.0% 45.1%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 48.0 3.42e-01 100.0% 55.4%
3fdjA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.54 40.0 4.09e-01 100.0% 94.7%
3jr7A02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.54 40.0 4.05e-01 100.0% 100.0%
3n6xA03 3.30.1490.270 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.52 42.0 3.88e-01 97.4% 69.6%
6cngA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.52 41.0 4.22e-01 100.0% 100.0%
2cpcA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.39e-01 100.0% 52.9%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 37.0 3.21e-01 100.0% 49.4%
4ktpA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.51 37.0 2.36e-01 79.5% 41.2%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971048 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.91 78.0 6.33e-01 94.9% 98.6%
3178235 308.1.1.0 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.87 77.0 5.84e-01 100.0% 85.6%
4643549 308.1.1.0 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.86 71.0 5.75e-01 94.9% 94.7%
4991413 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.84 70.0 6.98e-01 100.0% 92.5%
4997522 304.12.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.84 73.0 5.78e-01 100.0% 97.5%
4169399 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.83 67.0 5.43e-01 94.9% 100.0%
3963926 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.82 70.0 5.64e-01 100.0% 92.4%
5025566 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.80 68.0 6.16e-01 100.0% 100.0%
3581763 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.79 66.0 5.59e-01 100.0% 97.1%
5034652 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.78 66.0 5.55e-01 100.0% 95.7%
4186857 4012.1.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.78 64.0 6.36e-01 100.0% 92.5%
4531584 4012.1.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.78 63.0 6.28e-01 100.0% 92.5%
169110 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.77 64.0 5.44e-01 100.0% 58.6%
5040784 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.77 62.0 5.91e-01 100.0% 100.0%
1779574 4012.1.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.76 63.0 6.09e-01 100.0% 93.5%
4166798 4012.1.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.75 60.0 5.85e-01 100.0% 86.7%
3738248 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.74 63.0 5.14e-01 100.0% 50.7%
4985395 304.4.1.75 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › GYD 0.74 61.0 5.09e-01 100.0% 98.7%
4238497 2006.1.3.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim 0.74 60.0 3.75e-01 100.0% 17.0%
5039174 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.74 61.0 5.42e-01 100.0% 96.7%
4928824 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.74 61.0 4.71e-01 100.0% 84.2%
3277842 4187.1.1.1 ↗ a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB 0.73 56.0 5.03e-01 97.4% 60.0%
3423236 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.72 57.0 4.79e-01 94.9% 58.7%
4331897 235.1.1.41 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › TraH_2 0.72 61.0 4.14e-01 100.0% 42.7%
4483441 304.14.1.0 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.72 57.0 4.83e-01 100.0% 96.0%
3591023 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.70 57.0 4.64e-01 97.4% 95.0%
4927165 4187.1.1.1 ↗ a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB 0.70 52.0 4.85e-01 100.0% 63.6%
4995222 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.70 56.0 4.75e-01 100.0% 97.3%
3281602 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.70 55.0 5.35e-01 100.0% 89.6%
3290596 101.1.10.68 ↗ alpha arrays › HTH › HTH › Cyclin-like › DUF6630 0.69 53.0 4.14e-01 97.4% 38.1%
3935475 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 60.0 3.60e-01 100.0% 23.1%
3962617 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.68 59.0 3.75e-01 100.0% 20.5%
3252861 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.67 58.0 3.63e-01 100.0% 19.1%
3258276 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.67 58.0 3.59e-01 100.0% 18.7%
3875549 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.67 57.0 3.67e-01 100.0% 21.0%
3495764 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.67 57.0 3.71e-01 100.0% 22.2%
3907235 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.66 57.0 3.54e-01 100.0% 18.7%
3543655 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.66 57.0 3.56e-01 100.0% 19.1%
3988217 241.12.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like 0.66 50.0 3.36e-01 100.0% 20.0%
5038375 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.65 56.0 3.57e-01 100.0% 33.0%
3267853 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.65 56.0 3.48e-01 100.0% 18.6%
3497076 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 51.0 4.03e-01 100.0% 41.1%
4929359 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 50.0 4.64e-01 100.0% 67.3%
1734768 4187.1.1.1 ↗ a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB 0.63 51.0 4.66e-01 100.0% 72.4%
4122132 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 53.0 3.12e-01 100.0% 14.2%
None — 0.62 50.0 2.88e-01 92.3% 46.1%
4304758 2010.1.1.1 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.62 49.0 3.45e-01 100.0% 25.2%
4309483 2010.1.1.1 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.61 52.0 3.53e-01 100.0% 71.9%
3825244 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 48.0 3.30e-01 92.3% 75.7%
4940898 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.61 49.0 3.16e-01 92.3% 67.8%
4488855 275.1.1.5 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › Arc_PepC 0.61 47.0 3.95e-01 100.0% 97.6%
3378389 221.1.1.171 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_TPR1 0.61 44.0 3.47e-01 71.8% 33.8%
4216350 2010.1.1.1 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.59 47.0 3.25e-01 100.0% 24.4%
3962632 7504.1.1.3 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf 0.58 47.0 3.23e-01 89.7% 47.1%
3879988 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.58 50.0 3.19e-01 100.0% 31.6%
3621028 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.56 41.0 3.62e-01 100.0% 50.0%
3798311 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.55 40.0 3.81e-01 100.0% 63.6%
3295185 10.32.1.38 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like 0.54 46.0 3.01e-01 100.0% 29.2%
3180008 221.7.1.1 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › E2_bind 0.52 45.0 3.45e-01 100.0% 50.0%