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NC_070773.1__YP_010649736.1__PP410_gp01__00001

Bact-Vir

NC_070773.1__YP_010649736.1__PP410_gp01__00001

Identity

Accession:
NC_070773 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Enfavirus› Vibrio_phage_NF

TaxID: 2686202

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-39
PDB
Domain cluster: rep: MT227924.1__QIW88942.1__phiV208_1__00001__D3-34
D2 medium residues 48-88
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xsqB00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.71 38.0 2.47e-01 95.1% 11.2%
5fm5P00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 43.0 3.23e-01 100.0% 27.6%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.57 45.0 3.44e-01 100.0% 37.8%
2fauA01 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 3.23e-01 100.0% 55.6%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 3.36e-01 87.8% 55.8%
6qdws00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.54 43.0 3.31e-01 97.6% 79.8%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 40.0 3.59e-01 90.2% 61.2%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 2.95e-01 87.8% 54.0%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 41.0 3.49e-01 87.8% 55.1%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 41.0 3.53e-01 87.8% 84.8%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 2.62e-01 90.2% 16.4%
2vhjA02 2.30.270.20 Mainly Beta › Roll › duf1285 protein fold › 0.52 44.0 3.87e-01 100.0% 62.9%
1av4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.52 39.0 2.33e-01 90.2% 36.3%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.52 39.0 2.26e-01 87.8% 32.6%
1vwxg01 6.20.370.70 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.51 35.0 3.67e-01 100.0% 81.1%
4d4iA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.51 38.0 2.23e-01 85.4% 26.7%
5mz2I00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.51 35.0 2.61e-01 78.0% 92.8%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 36.0 3.44e-01 95.1% 60.0%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.51 43.0 3.19e-01 100.0% 43.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3899599 109.3.1.164 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.66 39.0 2.49e-01 90.2% 11.0%
3325850 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 42.0 2.72e-01 75.6% 16.7%
4511711 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.57 46.0 2.93e-01 100.0% 26.8%
3671769 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.57 48.0 3.71e-01 95.1% 62.2%
5060359 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.55 39.0 3.43e-01 100.0% 45.7%
3592085 4015.1.1.1 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.55 39.0 2.41e-01 85.4% 12.3%
3275934 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 33.0 3.72e-01 85.4% 83.3%
4028092 325.1.8.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N 0.54 40.0 3.74e-01 87.8% 96.4%
3218677 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 38.0 3.04e-01 75.6% 46.7%
3585959 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.53 42.0 2.64e-01 100.0% 51.3%
5078418 7584.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins 0.52 36.0 2.23e-01 73.2% 11.3%
3660746 359.1.1.0 ↗ few secondary structure elements › Bowman-Birk inhibitor, BBI-like › Bowman-Birk inhibitor, BBI-like › Bowman-Birk inhibitor, BBI-like 0.52 33.0 3.05e-01 100.0% 41.4%
4029417 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 36.0 2.24e-01 82.9% 13.3%
3677963 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.50 35.0 2.38e-01 75.6% 22.8%
4495606 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.50 38.0 2.69e-01 100.0% 65.6%
3645263 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.50 39.0 2.65e-01 100.0% 58.0%