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NC_070774.1__YP_010649814.1__PP411_gp04__00004

Bact-Vir

NC_070774.1__YP_010649814.1__PP411_gp04__00004

Identity

Accession:
NC_070774 ↗
Kingdom:
phage

Quality

77.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Tieomvirus› Vibrio_phage_vB_VpP_BT-1011

TaxID: 2799672

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-113
PDB
Domain cluster: rep: OP882271.1__WAX22429.1__X__00084__D6-144
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ailA00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.69 38.0 4.67e-01 79.1% 85.7%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.60 42.0 4.79e-01 98.2% 94.1%
1gs0A01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.59 46.0 4.35e-01 99.1% 70.5%
2yb5F01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.58 41.0 4.58e-01 100.0% 95.3%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.55 26.0 3.24e-01 84.5% 75.0%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.54 38.0 4.02e-01 100.0% 84.2%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 34.0 3.35e-01 97.3% 56.0%
6ygnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 30.0 3.06e-01 100.0% 55.6%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.51 36.0 2.85e-01 71.8% 47.2%
2o18A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.51 41.0 3.02e-01 88.2% 84.7%
3r0qA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.51 37.0 3.04e-01 76.4% 96.6%
4eqmA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 30.0 3.29e-01 99.1% 71.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3946464 3103.1.1.0 ↗ alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN 0.78 63.0 6.76e-01 97.3% 100.0%
4537543 3103.1.1.4 ↗ alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Phage_TAC_9 0.66 61.0 5.82e-01 100.0% 93.6%
3739042 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.65 52.0 3.88e-01 84.5% 82.9%
3975686 6050.1.1.2 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage_TAC_2 0.63 55.0 5.62e-01 97.3% 98.1%
5039176 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.61 49.0 3.81e-01 84.5% 75.6%
3468542 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.61 50.0 3.80e-01 87.3% 92.3%
3236224 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.58 41.0 4.03e-01 73.6% 68.7%
5006770 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.57 37.0 3.34e-01 99.1% 45.0%
3596717 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 42.0 2.95e-01 79.1% 59.4%
3252414 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 42.0 3.05e-01 79.1% 53.1%
4411573 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.55 41.0 3.01e-01 79.1% 53.9%
4989543 298.2.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE 0.55 38.0 3.37e-01 70.9% 90.3%
3682622 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 38.0 2.47e-01 73.6% 17.5%
4014830 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 28.0 3.60e-01 100.0% 96.4%
3712464 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 41.0 3.05e-01 81.8% 57.3%
4014502 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 41.0 2.79e-01 81.8% 48.6%
3823795 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 39.0 2.95e-01 79.1% 60.4%
4000743 206.1.1.78 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kinase-like 0.51 38.0 2.84e-01 79.1% 68.3%
4545902 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 28.0 3.02e-01 100.0% 60.0%
5035758 206.1.1.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.51 39.0 2.66e-01 82.7% 48.4%
3598225 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.50 37.0 2.90e-01 80.9% 62.9%