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NC_070774.1__YP_010649826.1__PP411_gp16__00016

Bact-Vir

NC_070774.1__YP_010649826.1__PP411_gp16__00016

Identity

Accession:
NC_070774 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Tieomvirus› Vibrio_phage_vB_VpP_BT-1011

TaxID: 2799672

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-67
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 62.0 5.59e-01 100.0% 66.3%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 59.0 4.52e-01 100.0% 39.8%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.71 66.0 5.88e-01 100.0% 84.8%
1gcbA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.70 61.0 3.70e-01 100.0% 23.7%
1pm3A00 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.69 56.0 5.29e-01 100.0% 75.4%
1rvjH02 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.68 55.0 4.25e-01 100.0% 40.2%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 61.0 5.20e-01 100.0% 63.0%
7c9rH01 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.68 57.0 4.24e-01 100.0% 37.2%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.64 56.0 3.92e-01 100.0% 49.0%
1b25A02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.62 40.0 2.92e-01 96.6% 21.9%
1ycyA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 47.0 4.65e-01 100.0% 80.6%
4txwA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 44.0 3.25e-01 78.0% 94.3%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 51.0 4.73e-01 100.0% 76.0%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 48.0 4.73e-01 100.0% 84.8%
3htrA00 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.58 51.0 4.32e-01 100.0% 61.2%
1cjcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 50.0 3.32e-01 100.0% 90.9%
1arbA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 44.0 3.66e-01 93.2% 72.1%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.56 44.0 3.50e-01 86.4% 72.8%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 3.97e-01 84.7% 71.2%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.55 44.0 4.22e-01 91.5% 75.4%
8ew8A01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.55 46.0 3.18e-01 100.0% 81.9%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 45.0 3.85e-01 93.2% 77.8%
5hy7B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.84e-01 96.6% 28.0%
1vwxf00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.54 42.0 3.48e-01 86.4% 89.0%
4ipeB02 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.54 42.0 3.19e-01 93.2% 46.7%
3q9tA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 46.0 3.07e-01 100.0% 54.9%
1mi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.80e-01 100.0% 81.0%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 45.0 4.44e-01 96.6% 90.6%
7e52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 47.0 3.71e-01 100.0% 96.1%
4r1kB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.38e-01 94.9% 78.7%
4j7rA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 40.0 2.41e-01 88.1% 87.4%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.52 41.0 3.21e-01 96.6% 83.2%
6frlA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 46.0 2.71e-01 100.0% 40.9%
1q1rA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 3.42e-01 100.0% 98.5%
4hspA00 2.40.50.870 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function (DUF3299) 0.51 41.0 3.14e-01 91.5% 94.6%
3wx1A00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.51 42.0 3.57e-01 100.0% 98.1%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3993946 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.91 58.0 7.02e-01 93.2% 97.5%
5022304 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.73 66.0 5.94e-01 100.0% 75.9%
4930644 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.72 65.0 5.71e-01 100.0% 72.9%
5040029 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.72 64.0 5.94e-01 100.0% 84.0%
3602773 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.71 63.0 5.85e-01 100.0% 85.3%
5068221 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.71 63.0 5.47e-01 100.0% 74.4%
4938053 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.71 62.0 5.79e-01 100.0% 84.0%
5033510 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.71 64.0 5.62e-01 100.0% 81.2%
4941938 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.70 62.0 5.61e-01 100.0% 85.0%
4969596 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.70 63.0 5.51e-01 100.0% 73.9%
4982621 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.70 63.0 5.38e-01 100.0% 71.0%
4966270 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.69 63.0 5.43e-01 100.0% 75.6%
5033523 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.69 61.0 5.68e-01 100.0% 84.0%
5039983 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.69 60.0 5.83e-01 94.9% 86.2%
5070050 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.68 60.0 5.61e-01 100.0% 85.3%
5056208 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.68 59.0 4.88e-01 100.0% 56.0%
5056799 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.68 61.0 5.01e-01 100.0% 56.2%
4969855 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.68 60.0 5.46e-01 100.0% 78.8%
3658643 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 61.0 4.47e-01 100.0% 40.0%
4972304 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.67 60.0 5.31e-01 100.0% 76.5%
3603761 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.67 60.0 5.54e-01 100.0% 81.3%
5061565 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.67 60.0 5.30e-01 100.0% 71.8%
3675120 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 61.0 5.36e-01 100.0% 75.3%
5066831 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.67 59.0 5.17e-01 100.0% 71.9%
5033187 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.66 58.0 5.43e-01 100.0% 87.7%
4955897 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.66 58.0 5.16e-01 100.0% 81.2%
4960988 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.66 57.0 5.22e-01 100.0% 78.8%
5024232 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.65 60.0 5.03e-01 100.0% 71.6%
3237286 2.3.1.3 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NtA 0.65 53.0 4.47e-01 91.5% 83.8%
5074021 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.65 57.0 4.94e-01 100.0% 67.4%
5037785 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.65 57.0 5.20e-01 100.0% 80.0%
3214653 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 54.0 4.56e-01 100.0% 55.8%
4995604 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.65 57.0 5.07e-01 100.0% 77.6%
4953610 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.65 57.0 5.21e-01 100.0% 83.3%
4953339 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.65 56.0 5.06e-01 100.0% 71.2%
5073863 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.64 55.0 5.39e-01 100.0% 87.7%
5057254 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.63 56.0 5.17e-01 100.0% 86.7%
3224227 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.62 42.0 2.74e-01 71.2% 22.6%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 55.0 4.98e-01 100.0% 80.0%
3369733 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.62 47.0 2.94e-01 83.1% 42.4%
4342003 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.61 54.0 4.89e-01 100.0% 77.5%
3229356 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 56.0 4.54e-01 100.0% 63.8%
3706000 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 54.0 4.97e-01 100.0% 88.0%
3259679 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.60 46.0 3.49e-01 83.1% 83.3%
5022509 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.60 54.0 4.99e-01 100.0% 92.0%
4012953 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 53.0 3.94e-01 100.0% 48.7%
3340627 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.59 47.0 3.21e-01 86.4% 39.0%
3680638 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.59 46.0 3.02e-01 86.4% 60.0%
4387099 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 51.0 4.70e-01 100.0% 78.8%
3736329 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.59 49.0 3.60e-01 100.0% 42.2%
3708852 2003.1.3.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2, NAD_binding_8 0.58 50.0 3.00e-01 100.0% 43.7%
1207609 212.1.1.1 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.58 46.0 3.70e-01 91.5% 66.9%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 50.0 4.49e-01 100.0% 77.6%
3435671 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.58 47.0 3.06e-01 89.8% 64.2%
3413048 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.57 48.0 2.89e-01 100.0% 30.8%
4011874 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.57 50.0 3.01e-01 100.0% 47.5%
5041467 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.56 46.0 3.11e-01 93.2% 35.4%
4078661 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 47.0 2.86e-01 100.0% 48.4%
3197542 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.55 48.0 2.86e-01 100.0% 32.4%
3566453 6043.1.1.4 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.55 39.0 3.48e-01 79.7% 76.6%
3694881 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.54 47.0 3.00e-01 100.0% 43.7%
3618632 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.53 41.0 2.62e-01 94.9% 15.2%
4359531 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 44.0 4.01e-01 94.9% 86.3%
3426256 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.52 43.0 3.48e-01 91.5% 68.7%
3600213 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 46.0 2.76e-01 100.0% 39.6%
3312053 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.52 43.0 3.61e-01 93.2% 78.1%
4418230 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.51 41.0 2.68e-01 96.6% 29.5%
3326257 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.51 40.0 2.71e-01 93.2% 24.7%
3673069 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.51 40.0 3.36e-01 89.8% 73.6%
3423704 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.50 41.0 3.41e-01 93.2% 71.8%