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NC_070774.1__YP_010649847.1__PP411_gp37__00037
Bact-VirNC_070774.1__YP_010649847.1__PP411_gp37__00037
Identity
- Accession:
- NC_070774 ↗
- Kingdom:
- phage
Quality
93.6
mean pLDDT
Taxonomy
TaxID: 2799672
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-68
Domain cluster:
rep: MK510993.1__QBI78973.1__X__00019__D4-53
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02954.26 best | HTH_8 | 30.0 | 4.90e-07 | 45.5% | 64.3% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cw1A00 | 3.30.240.10 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor | 0.81 | 68.0 | 6.88e-01 | 100.0% | 92.3% |
| 1d1lA00 | 3.30.240.10 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor | 0.74 | 59.0 | 6.09e-01 | 93.9% | 93.4% |
| 1a7tA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.73 | 40.0 | 2.71e-01 | 100.0% | 15.4% |
| 1tc3C00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 41.0 | 4.61e-01 | 86.4% | 84.3% |
| 3bd1A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.61 | 46.0 | 4.63e-01 | 78.8% | 87.7% |
| 6zepA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.60 | 41.0 | 2.68e-01 | 72.7% | 31.4% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 40.0 | 3.94e-01 | 71.2% | 88.9% |
| 2ictA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.58 | 44.0 | 4.17e-01 | 81.8% | 79.0% |
| 2ge3A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 50.0 | 3.79e-01 | 100.0% | 50.0% |
| 3zqsA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.55 | 35.0 | 3.25e-01 | 83.3% | 47.7% |
| 2kr7A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.54 | 31.0 | 3.32e-01 | 93.9% | 63.2% |
| 3g7dA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 40.0 | 3.65e-01 | 78.8% | 59.3% |
| 2r1jL00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 40.0 | 4.05e-01 | 78.8% | 86.4% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 32.0 | 3.41e-01 | 100.0% | 67.9% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 31.0 | 3.07e-01 | 100.0% | 49.3% |
| 5i4eA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.53 | 30.0 | 3.39e-01 | 100.0% | 76.1% |
| 2veaA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 38.0 | 3.09e-01 | 75.8% | 83.8% |
| 3op9A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.52 | 38.0 | 3.86e-01 | 78.8% | 83.8% |
| 3duzA03 | 6.10.250.3010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.51 | 27.0 | 2.58e-01 | 83.3% | 40.3% |
| 2cztA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 37.0 | 2.88e-01 | 100.0% | 34.2% |
| 2wbfX00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 42.0 | 2.87e-01 | 97.0% | 89.1% |
| 5os9A00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.50 | 40.0 | 3.48e-01 | 93.9% | 95.7% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 159227 | 101.1.4.11 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Cro | 0.81 | 68.0 | 6.88e-01 | 100.0% | 92.3% |
| 46219 | 101.1.4.11 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Cro | 0.77 | 63.0 | 6.32e-01 | 100.0% | 89.4% |
| 2389361 | 101.1.4.11 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Cro | 0.74 | 55.0 | 5.71e-01 | 81.8% | 85.5% |
| 3832176 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.64 | 35.0 | 3.48e-01 | 86.4% | 50.0% |
| 5059099 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.64 | 45.0 | 4.13e-01 | 77.3% | 55.7% |
| 4025311 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.59 | 34.0 | 3.84e-01 | 98.5% | 74.0% |
| 3987793 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 43.0 | 3.28e-01 | 78.8% | 41.8% |
| 3589192 | 101.1.1.68 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 | 0.59 | 47.0 | 4.39e-01 | 84.8% | 90.0% |
| 5076798 | 321.1.1.7 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 | 0.58 | 41.0 | 2.55e-01 | 75.8% | 14.0% |
| 3939238 | 101.1.1.52 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › BrkDBD | 0.58 | 51.0 | 4.59e-01 | 97.0% | 87.8% |
| 3379143 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.58 | 36.0 | 2.43e-01 | 100.0% | 16.0% |
| 3883144 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.58 | 51.0 | 4.41e-01 | 100.0% | 73.3% |
| 4611007 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.57 | 40.0 | 3.38e-01 | 77.3% | 42.1% |
| 3805000 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.57 | 39.0 | 2.67e-01 | 71.2% | 35.9% |
| 3707978 | 5.1.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed | 0.56 | 43.0 | 3.07e-01 | 81.8% | 56.9% |
| 4400545 | 3433.1.2.1 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer | 0.56 | 33.0 | 3.62e-01 | 87.9% | 71.7% |
| 3393661 | 243.19.1.2 ↗ | a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains › Chitin_bind_4 | 0.55 | 35.0 | 3.67e-01 | 100.0% | 70.0% |
| 3818376 | 1.1.11.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 | 0.55 | 40.0 | 3.39e-01 | 78.8% | 89.6% |
| 3547884 | 389.1.2.7 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › THBD | 0.55 | 39.0 | 3.84e-01 | 100.0% | 70.0% |
| 3683684 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.54 | 40.0 | 3.10e-01 | 77.3% | 52.4% |
| 5039710 | 2011.1.1.6 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 | 0.54 | 39.0 | 2.65e-01 | 77.3% | 45.5% |
| 3813512 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.54 | 40.0 | 3.46e-01 | 81.8% | 88.2% |
| 5060170 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.54 | 46.0 | 3.01e-01 | 98.5% | 42.5% |
| 4997274 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.54 | 44.0 | 3.28e-01 | 92.4% | 77.7% |
| 3997872 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 30.0 | 3.52e-01 | 95.5% | 100.0% |
| 4979598 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.52 | 42.0 | 4.20e-01 | 89.4% | 84.3% |
| 3548416 | 220.1.1.158 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 | 0.52 | 38.0 | 3.25e-01 | 80.3% | 77.5% |
| 3624046 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 38.0 | 3.22e-01 | 81.8% | 69.2% |
| 4981303 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.51 | 28.0 | 3.05e-01 | 83.3% | 60.0% |
| None | — | 0.51 | 43.0 | 2.80e-01 | 100.0% | 33.6% | |
| 4026587 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.51 | 40.0 | 2.97e-01 | 90.9% | 42.0% |
| 5048394 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 31.0 | 3.64e-01 | 98.5% | 91.1% |
| 3524747 | 827.1.1.1 ↗ | a+b two layers › Integrin beta tail domain › Integrin beta tail domain › Integrin beta tail domain › Integrin_B_tail | 0.50 | 39.0 | 3.68e-01 | 84.8% | 93.8% |
| 3930641 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.50 | 42.0 | 3.65e-01 | 100.0% | 59.0% |
| 3928322 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.50 | 42.0 | 3.64e-01 | 100.0% | 59.0% |
| 4386779 | 2004.1.1.429 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 | 0.50 | 34.0 | 2.14e-01 | 71.2% | 26.3% |