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NC_070777.1__YP_010650394.1__PP422_gp143__00143

Bact-Vir

NC_070777.1__YP_010650394.1__PP422_gp143__00143

Identity

Accession:
NC_070777 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Kanagawavirus› Enterobacter_phage_vB_EhoM-IME523

TaxID: 2596709

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-61
PDB
Domain cluster: rep: SRR1747022_scaffold_36_prodigal-single.1__X__X__00131__D11-62
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26909.1 best Phage_T4_Y16K 118.0 2.30e-34 100.0% 89.4%
D2 high residues 127-201
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jqrA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.62 42.0 3.04e-01 70.7% 87.8%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.60 51.0 3.70e-01 96.0% 85.5%
5mmjp00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.59 43.0 4.26e-01 97.3% 73.8%
5aj3P00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.56 45.0 3.93e-01 100.0% 57.3%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.53 33.0 3.71e-01 74.7% 81.4%
2e3nA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 45.0 3.25e-01 96.0% 81.4%
1vwxr00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.53 39.0 3.37e-01 98.7% 48.0%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.53 37.0 3.21e-01 78.7% 48.2%
3r2uB01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 40.0 2.88e-01 85.3% 80.2%
2gcuA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 39.0 2.87e-01 84.0% 81.0%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.52 37.0 3.36e-01 80.0% 53.8%
4h7wA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.52 44.0 3.41e-01 100.0% 47.1%
3cqyB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 45.0 3.43e-01 100.0% 48.9%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.51 38.0 3.47e-01 97.3% 58.5%
5h5zA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 4.24e-01 98.7% 96.6%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.51 35.0 2.83e-01 93.3% 34.2%
2xe4A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.51 43.0 2.84e-01 98.7% 21.3%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4075339 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.64 43.0 4.03e-01 70.7% 98.9%
3785293 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.58 47.0 4.18e-01 98.7% 61.8%
5016404 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 43.0 4.30e-01 97.3% 77.5%
3998228 246.3.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.55 37.0 2.78e-01 100.0% 27.6%
4500983 304.8.1.53 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th 0.55 48.0 3.83e-01 100.0% 57.5%
4527322 223.2.1.18 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin_2 0.54 42.0 3.18e-01 100.0% 34.6%
4997789 241.9.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.54 41.0 3.76e-01 97.3% 60.6%
4114421 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.54 45.0 4.11e-01 96.0% 84.8%
4583308 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 45.0 3.53e-01 96.0% 52.4%
5049973 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 46.0 3.81e-01 98.7% 95.0%
4055235 2484.1.1.41 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.53 46.0 3.38e-01 100.0% 52.7%
3368757 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.53 45.0 4.21e-01 97.3% 93.7%
4934986 3054.1.1.0 ↗ alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol 0.52 47.0 3.91e-01 100.0% 96.9%
4646540 223.2.1.18 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin_2 0.52 44.0 3.44e-01 97.3% 96.7%
6661 4276.1.1.1 ↗ a+b two layers › XisI-like › XisI-like › XisI-like › XisI 0.52 37.0 3.36e-01 80.0% 53.8%
3505546 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.52 45.0 4.14e-01 98.7% 81.0%
3490145 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 37.0 2.77e-01 80.0% 29.5%
5015778 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.51 43.0 3.01e-01 96.0% 38.9%
3221010 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.51 37.0 3.06e-01 90.7% 40.7%
3665392 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 43.0 3.81e-01 100.0% 83.3%
3715664 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 45.0 3.78e-01 100.0% 80.8%
3822142 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.51 42.0 2.82e-01 93.3% 50.0%
3520584 3147.1.1.1 ↗ a+b two layers › Uncharacterized protein EF_1977 › Uncharacterized protein EF_1977 › Uncharacterized protein EF_1977 › DUF3013 0.51 43.0 3.70e-01 96.0% 60.0%
3281355 304.12.1.12 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › GDH_ACT2 0.51 43.0 3.94e-01 100.0% 100.0%
3317514 7579.1.1.95 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Hydrolase_4 0.51 43.0 2.88e-01 97.3% 58.7%
3637683 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 41.0 3.18e-01 96.0% 37.9%
185702 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.50 37.0 2.97e-01 82.7% 84.0%