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NC_070778.1__YP_010650608.1__PP425_gp068__00068

Bact-Vir

NC_070778.1__YP_010650608.1__PP425_gp068__00068

Identity

Accession:
NC_070778 ↗
Kingdom:
phage

Quality

91.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Kanagawavirus› Enterobacter_phage_vB_EclM_Q7622

TaxID: 2908628

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-75
PDB
Domain cluster: rep: MT161459.1__QIW86959.1__AHP1_1281__00128__D11-81
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17595.8 best DUF5491 73.0 2.90e-20 93.2% 97.1%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4frwA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 40.0 3.66e-01 100.0% 42.7%
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.69 43.0 4.18e-01 100.0% 55.3%
4ofyD02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 40.0 3.53e-01 100.0% 43.0%
1sc6A03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 40.0 3.87e-01 100.0% 57.3%
4hvmD02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.62 54.0 4.04e-01 100.0% 87.3%
2k3iA01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 43.0 4.17e-01 100.0% 63.5%
5suvC00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.62 54.0 4.60e-01 100.0% 96.8%
2wdoA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.62 53.0 4.58e-01 100.0% 95.9%
2c43A01 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.61 53.0 4.31e-01 98.6% 74.1%
5xukA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.60 52.0 4.59e-01 98.6% 99.1%
2bddA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.60 52.0 4.43e-01 100.0% 92.9%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 38.0 3.62e-01 100.0% 52.2%
5cxdB01 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.60 51.0 4.45e-01 100.0% 93.3%
1dpbA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.60 50.0 3.63e-01 100.0% 72.4%
1ygyA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 37.0 3.74e-01 100.0% 61.8%
4ig1A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.59 41.0 2.73e-01 74.3% 60.4%
1g84A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 37.0 3.29e-01 100.0% 44.8%
1fthA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.58 50.0 4.39e-01 100.0% 95.7%
4wxaA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.58 39.0 3.74e-01 100.0% 60.7%
5xuhA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.58 50.0 4.28e-01 100.0% 96.8%
1qr0A01 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.58 50.0 4.29e-01 98.6% 81.6%
3gwmA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.58 50.0 4.23e-01 100.0% 96.1%
7kjhC01 2.60.40.2860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 3.81e-01 100.0% 50.8%
3oq3B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 3.57e-01 100.0% 52.4%
4puxA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.56 49.0 3.87e-01 100.0% 93.6%
2ivfC00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 48.0 3.50e-01 100.0% 47.2%
1wqwA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 46.0 3.58e-01 100.0% 46.5%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 48.0 3.97e-01 100.0% 69.4%
3l1aA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 47.0 3.46e-01 100.0% 41.7%
4tpvA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.54 47.0 3.59e-01 100.0% 40.1%
2yz0A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 40.0 3.35e-01 79.7% 84.8%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.54 48.0 3.92e-01 100.0% 90.7%
2e5aA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 46.0 3.34e-01 100.0% 39.4%
1wjwA01 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.54 41.0 4.03e-01 100.0% 75.3%
5weeB00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.54 47.0 3.54e-01 100.0% 41.2%
2l8oA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 47.0 3.82e-01 100.0% 72.9%
1g0dA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.45e-01 100.0% 46.7%
6efyA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.36e-01 100.0% 55.1%
3njcA00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.53 41.0 3.31e-01 86.5% 79.7%
2nq2D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 38.0 2.70e-01 78.4% 54.8%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.52 42.0 3.81e-01 100.0% 65.0%
1kcvL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 33.0 3.00e-01 100.0% 45.6%
6iomB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.51 31.0 3.15e-01 100.0% 59.7%
1dw9A02 3.30.1160.10 Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain 0.51 37.0 3.87e-01 78.4% 91.2%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4997522 304.12.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.77 50.0 4.88e-01 100.0% 61.3%
4270552 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.72 42.0 3.80e-01 100.0% 44.0%
3991552 11.1.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.70 42.0 3.99e-01 100.0% 50.0%
4972691 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.68 39.0 3.53e-01 100.0% 42.0%
3220487 256.1.1.0 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.66 45.0 5.04e-01 100.0% 94.5%
5073065 812.1.1.0 ↗ a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain 0.64 50.0 5.30e-01 100.0% 93.8%
3985634 3313.1.1.1 ↗ a+b two layers › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › DUF406 0.64 45.0 4.06e-01 100.0% 54.0%
3234620 3246.1.1.1 ↗ few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAM_CR 0.64 33.0 2.85e-01 100.0% 30.0%
5067363 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.64 40.0 3.98e-01 100.0% 58.7%
4493048 301.8.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.62 54.0 4.63e-01 100.0% 90.4%
3533042 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.62 38.0 3.55e-01 100.0% 47.4%
4207774 301.8.1.3 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › AASDHPPT_N 0.62 54.0 4.28e-01 98.6% 68.6%
3392065 301.8.1.3 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › AASDHPPT_N 0.61 54.0 4.48e-01 100.0% 80.7%
3895213 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.61 38.0 3.44e-01 100.0% 44.8%
3940708 4012.4.1.1 ↗ a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain › DPAGT1_ins 0.61 37.0 4.51e-01 100.0% 100.0%
4432202 301.8.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.61 53.0 4.56e-01 100.0% 94.2%
5002717 304.39.1.1 ↗ a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.61 44.0 3.96e-01 100.0% 56.0%
1498215 306.9.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › MecA substrate binding domain › MecA substrate binding domain › MecA 0.61 51.0 4.82e-01 100.0% 77.8%
4481782 301.8.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.61 52.0 4.51e-01 100.0% 95.1%
5024285 3501.1.1.2 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › DUF2067 0.60 38.0 4.07e-01 100.0% 73.8%
4629319 304.55.1.13 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Relaxase 0.60 44.0 3.80e-01 100.0% 48.3%
3703948 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 43.0 3.87e-01 100.0% 53.3%
4943420 3501.1.1.2 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › DUF2067 0.60 39.0 4.01e-01 100.0% 70.0%
4027522 331.9.1.5 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP4E_app_platf 0.60 48.0 4.45e-01 100.0% 68.4%
4177299 301.8.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase 0.59 53.0 4.57e-01 100.0% 87.8%
3492286 301.8.1.3 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › AASDHPPT_N 0.59 51.0 4.61e-01 97.3% 100.0%
3164462 301.8.1.3 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › AASDHPPT_N 0.59 53.0 4.70e-01 100.0% 96.2%
3395225 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.59 37.0 2.84e-01 100.0% 25.3%
3284754 301.8.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.59 51.0 4.29e-01 100.0% 96.2%
3962932 301.8.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase 0.59 51.0 4.30e-01 100.0% 95.4%
3267885 223.2.1.1 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.57 49.0 4.13e-01 100.0% 71.9%
4653756 301.8.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.57 48.0 4.24e-01 100.0% 96.7%
4370025 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.57 45.0 4.01e-01 100.0% 60.0%
3400743 314.1.1.6 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.55 47.0 3.27e-01 100.0% 32.9%
3487159 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.55 41.0 2.77e-01 83.8% 56.5%
3236190 314.1.1.6 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.55 46.0 3.47e-01 100.0% 42.8%
4130731 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.55 38.0 3.08e-01 100.0% 36.0%
4569091 11.1.1.88 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM9_1 0.55 49.0 3.71e-01 100.0% 42.9%
5048170 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.54 42.0 4.17e-01 100.0% 81.2%
5035779 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 40.0 3.45e-01 98.6% 49.2%
5026882 3501.1.1.1 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.54 38.0 3.74e-01 100.0% 67.5%
4013845 387.1.5.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.53 38.0 4.16e-01 100.0% 96.6%
4538961 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.53 36.0 3.61e-01 100.0% 69.3%
312608 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.52 38.0 2.70e-01 78.4% 54.8%
4228959 2004.1.1.84 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TsaE 0.52 44.0 3.60e-01 98.6% 93.3%
4994966 314.1.1.6 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.52 44.0 3.28e-01 100.0% 41.9%
4966310 223.8.1.0 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain 0.51 43.0 4.04e-01 100.0% 96.8%
5008200 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 41.0 4.26e-01 100.0% 95.7%
5001387 330.10.1.1 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.50 42.0 3.19e-01 100.0% 77.6%
1807492 387.1.3.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Colipase-like 0.50 31.0 3.47e-01 100.0% 95.7%
3839285 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.50 38.0 2.96e-01 86.5% 85.9%